rs251661647 SNP Detail

Summary

• ID
  rs251661647
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:13336652 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTTTCATAG TCTCCCACAG
  AGCTCAACAC AGTTCCTCAC ATACAACAGC AGCTGTTTAG AATTGTTTCA GCAGGTGACA
  ATCAGTAAAG AGATACAGGA CAAGTGGACC TTCCAAACAA CAGAAGCTGG TACGAAAAGT
  TTCATACACT TTATGTTATC TTGTGAAGAA TAACACACAA CCTAGGCACA AGAGTGCTCC
  Y
  ATATAAGATT TTAGAAAGCA TCTGTAAAAT GTCCTTCCAC AGACACTTAG CAAAATACCT
  CCTCTTATGG TCAATTTCAA AGGGCTCATA GGACAAACAT TTGCTCAAAC AGATTTGCGG
  CCCACTACAG ATTGACTGTG CTTTGCCATG TGCAAGCCTG GAAATGAGGG CATCAAGTCC
  AAGTGTTCCC AAATCTTGAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322505822	CHEV_8_13286652	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs251661647					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:13336652 () rs orientation: forward

Symbol	Name	Function Class
9530085L11Rik	RIKEN cDNA 9530085L11 gene	within coordinates
Cpgi20111	CpG island 20111	426 bp proximal
Dcun1d2	defective in cullin neddylation 1 domain containing 2	within coordinates
Rr659903	regulatory region 659903	228 bp proximal
Rr659904	regulatory region 659904	748 bp proximal
Rr659905	regulatory region 659905	1171 bp proximal
Rr659906	regulatory region 659906	1570 bp proximal
Tmco3	transmembrane and coiled-coil domains 3	1538 bp upstream
Tssr76388	transcription start site region 76388	1235 bp upstream
Tssr76389	transcription start site region 76389	1521 bp upstream
Tssr76390	transcription start site region 76390	1585 bp upstream
Tssr76391	transcription start site region 76391	1631 bp upstream
Tssr80437	transcription start site region 80437	1162 bp downstream