rs251676197 SNP Detail

Summary

• ID
  rs251676197
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:58883849 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    CAGTTGTCA AATTAACAtt ttcgttgatt
  agatagttct tcatgtagtc tggctgttga tcctttgtca gatgtcttag ctagcaaaga
  tggctctcct gttctgAAGG GTCTTTTCGG TAGTCAGAAG CTATTTGATT TTATGTTGTC
  M
  ATTTTTATCC CAGAAGGTTC CTACCTTGTT TTGTACCCAG AGGCAAGGAA AGTCTGACAG
  GCATGTGAGT TCTGGAGAGA GATGCTTGGT GCTTCTGGAA AGCTTGCAGC TAACTGCTCA
  GCTCTACATC AGGGCAGGTG GACTTGAAGT                                 
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323695529	CHEV_11_58806525	CHEVERUD	SCREENING_POP	f	SNP	A	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs251676197					SNP	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:58883849 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2948	CpG island 2948	1221 bp proximal
Gm73767	predicted gene, 73767	1224 bp upstream
Gm74293	predicted gene, 74293	within coordinates
Obscn	obscurin, cytoskeletal calmodulin and titin-interacting RhoGEF	1233 bp downstream
Trim11	tripartite motif-containing 11	1565 bp downstream
Tssr108185	transcription start site region 108185	1258 bp upstream