rs251677004 SNP Detail

Summary

• ID
  rs251677004
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:128060667 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TAGGCCCTT CATAAGTAAA ATCATATCCT
  ATTAAACATT TACTTTGATG TAAAGACTTT ACATTAGGTT tacatatata tatacatgta
  atatatacat gtgtatgtat acatatatat atgtgtgtgt gtgtgtgtgt gtgtgtgtgt
  R
  tatatatata tatatatata tatatatata tatatataAA CAAACTTCAG GAAGTATGAC
  AATACCTGTA ATTTAAATCA ATCAAAAAAA TTAAAAACCA GACAACACTA TTTTAACCAA
  AGTACATTTG TAAAAAATTT GAGCACCTCT                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322451662	CHEV_7_135602457	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs251677004					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:128060667 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi19791	CpG island 19791			1343 bp proximal
Rr656040	regulatory region 656040			904 bp proximal
Rr656041	regulatory region 656041			1519 bp proximal
Tial1	Tia1 cytotoxic granule-associated RNA binding protein-like 1			Intron
				Noncoding-Transcript-Variant
Tssr75109	transcription start site region 75109			779 bp downstream