rs251699366 SNP Detail

Summary

• ID
  rs251699366
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr10:67373862 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTGCCCATA AATACTCCGA
  GCCTAACACT TTCCGTCTGA GAGAGCAGCG ATTGATTAAT AGCTGGGCGA GGGGACACAC
  TGACTGTTAT AATAACACTA CACCAGCAAC TCCTGGCTCC CCAACAGCCG GATCACAGGC
  AGGAGAGAGT CAGTGACGGA TAGACTTTTT TTTTTCTTTA AGAAGCCAAC AACTTGGTTG
  Y
  TAGTTTTATT TCTGTTAATT TTTTTCTTTT TTTTGGTGTG TGTGGATGTG TTGTGGTGGT
  CTTTTCTAAG TGTGGAGGGC AAAAGGAGAT ACCATCCTAG GCTCAGTTCA ACCCCTCTCC
  AAAAAAAACG GCTTCTCTGG CGCTCCAGGT AGCGAGGGAG TTGGGTCTCC AGGTTGTGCG
  AGGAGCAAAT GATGACCGCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss380736036	MGP_WTSI_10_67000780	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs251699366					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss380736036	MGP_WTSI_10_67000780	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:67373862 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi1668	CpG island 1668			956 bp distal
Cpgi1669	CpG island 1669			103 bp distal
Cpgi1670	CpG island 1670			138 bp proximal
Egr2	early growth response 2			Intron
				mRNA-UTR
Gm66196	predicted gene, 66196			271 bp upstream
Rr369011	regulatory region 369011			448 bp downstream
Rr401960	regulatory region 401960			64 bp downstream
Rr433075	regulatory region 433075			282 bp distal
Rr433076	regulatory region 433076			152 bp distal
Rr433077	regulatory region 433077			161 bp proximal
Rr433078	regulatory region 433078			662 bp proximal
Tssr93833	transcription start site region 93833			819 bp downstream
Tssr93834	transcription start site region 93834			155 bp downstream
Tssr93835	transcription start site region 93835			31 bp upstream
Tssr93836	transcription start site region 93836			154 bp upstream
Tssr93837	transcription start site region 93837			267 bp upstream
Tssr93838	transcription start site region 93838			431 bp upstream
Tssr93839	transcription start site region 93839			531 bp upstream
Tssr93840	transcription start site region 93840			1218 bp upstream
Tssr93841	transcription start site region 93841			1766 bp upstream
Tssr93842	transcription start site region 93842			1821 bp upstream
Tssr93843	transcription start site region 93843			1906 bp upstream
Tssr93844	transcription start site region 93844			1942 bp upstream
Tssr93845	transcription start site region 93845			1984 bp upstream
Tssr97949	transcription start site region 97949			1229 bp upstream
Tssr97950	transcription start site region 97950			874 bp upstream
Tssr97951	transcription start site region 97951			636 bp upstream
Tssr97952	transcription start site region 97952			321 bp upstream
Tssr97953	transcription start site region 97953			1130 bp downstream