rs251701798 SNP Detail

Summary

• ID
  rs251701798
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:45174310 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTGTGTTAT GATGTTGCAT
  TGTTGCATGT TTGTGTGGTC TGTGCATTCC TGTGTGTATA TGTGTGAATA TGTGTGTATG
  TGTGATGTCT ATGCAGGCCA AAGGTTGTGT GTGTGTGTGT GTGTGTGTGT GCGTGTGAGA
  GAGAGAGAGA GATGCCTTTG CACTTTTCCT TGACCTTGCA TGTGCCCCAT TTCCTTTCTT
  K
  TGTGTGTGTG TGTGTGTATG TGTGTGTAGG AGCAGGTGGA GCAAGGTCTC ATTGTGTAAC
  ATTGGCTGGT CTAGAACTCA CTCTGTAGAC CAGGCTGTCC AGGACCACAC AGAGATCCAT
  GGCCTGCTTC TGCCTCATGA GTGCTGGGGT GAAAGGCATG GACCACCATG CTCCATTTCC
  ACTTTATTTT TTGAGACAGG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CE/J	DBA/1J	DBA/2J	FVB/NJ	LEWES/EiJ	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	ZALENDE/EiJ
ss377428879	MGP_WTSI_9_45071095	EVA_MGPV3	EVA_MGPV3	f	SNP	T	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CE/J	DBA/1J	DBA/2J	FVB/NJ	LEWES/EiJ	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	ZALENDE/EiJ
rs251701798					SNP	T	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss377428879	MGP_WTSI_9_45071095	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:45174310 () rs orientation: forward

Symbol	Name	Function Class
Gm20612	predicted gene 20612	1722 bp downstream
Il10ra	interleukin 10 receptor, alpha	within coordinates
Rr677873	regulatory region 677873	1213 bp distal
Tssr84758	transcription start site region 84758	1870 bp upstream
Tssr89253	transcription start site region 89253	73 bp upstream
Tssr89254	transcription start site region 89254	4 bp upstream
Tssr89255	transcription start site region 89255	34 bp downstream
Tssr89256	transcription start site region 89256	58 bp downstream
Tssr89257	transcription start site region 89257	1164 bp downstream
Tssr89258	transcription start site region 89258	1205 bp downstream
Tssr89259	transcription start site region 89259	1228 bp downstream