rs251708937 SNP Detail

Summary

• ID
  rs251708937
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr12:112641056 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTCAC CGGTGTCCTA AAGGCCAGCC
  T
  ACACAAGAAA GAAGGCTATT GAGGG                                      
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324170083	CHEV_12_113912833	CHEVERUD	SCREENING_POP	f	SNP	T	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs251708937					SNP	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:112641056 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Akt1	thymoma viral proto-oncogene 1			Intron
				Noncoding-Transcript-Variant
Cpgi5173	CpG island 5173			within coordinates
Gm30150	predicted gene, 30150			within coordinates
Rr369631	regulatory region 369631			808 bp upstream
Rr473552	regulatory region 473552			1693 bp distal
Rr473553	regulatory region 473553			357 bp distal
Rr473554	regulatory region 473554			201 bp distal
Rr473555	regulatory region 473555			222 bp distal
Rr473556	regulatory region 473556			within coordinates
Rr473557	regulatory region 473557			360 bp proximal
Rr473558	regulatory region 473558			825 bp proximal
Rr473559	regulatory region 473559			1016 bp proximal
Rr473560	regulatory region 473560			1262 bp proximal
Tssr115391	transcription start site region 115391			199 bp downstream
Tssr117877	transcription start site region 117877			595 bp upstream
Tssr117878	transcription start site region 117878			536 bp upstream
Tssr117879	transcription start site region 117879			347 bp upstream
Tssr117880	transcription start site region 117880			255 bp upstream
Tssr117881	transcription start site region 117881			237 bp upstream
Tssr117882	transcription start site region 117882			131 bp downstream
Tssr117883	transcription start site region 117883			152 bp downstream
Tssr117884	transcription start site region 117884			204 bp downstream