rs251712813 SNP Detail

Summary

• ID
  rs251712813
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:166903262 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTACCAAAC CCTGTTCTTA
  TGATGCAGGC TCAATGGTTA GTGTTTGTTT TAAGAAAAAT TTTCTGAGGA AAATCCCTTC
  TTCCTCATTT TGAAAAAAAA ATACTAAAAT AGAATGCAGC AGCAGTGTAA AAGAAAACAG
  AAGCAAATAA GTGCTAGAGA AGGCGAGGGA AGAGTGGCAG GAGCAGGCGG GGAGGGCAAG
  Y
  AAGGCAGGGA GGGCAAGCAA GGCAGGGAGG GCACCAGATC AGCAATGGTT AAGCTGTTGC
  AGGGATAACA TTTAGAGACT TCTAATTACA GGGTAAGATG AAAGAGGATG GAGCAAGAGG
  TGGCAGCTGG GTTGTAGCTA GGTAAATTTC AAGTCCCGAG AGAAGTCGCC ACACCATACA
  TCCCTCAGAG AAACACTGTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss356497131	MGP_WTSI_2_166886842	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T	T	T	T	C	C	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs251712813					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T	T	T	T	C	C	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss356497131	MGP_WTSI_2_166886842	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:166903262 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12730	CpG island 12730	778 bp proximal
Gm56406	predicted gene, 56406	1674 bp upstream
Gm75600	predicted gene, 75600	229 bp downstream
Rr397500	regulatory region 397500	1788 bp upstream
Rr570436	regulatory region 570436	988 bp distal
Rr570437	regulatory region 570437	780 bp distal
Rr570438	regulatory region 570438	568 bp distal
Rr570439	regulatory region 570439	48 bp proximal
Rr570440	regulatory region 570440	549 bp proximal
Rr570441	regulatory region 570441	1663 bp proximal
Tssr21786	transcription start site region 21786	795 bp downstream
Tssr21787	transcription start site region 21787	53 bp downstream
Tssr21788	transcription start site region 21788	40 bp downstream
Tssr21789	transcription start site region 21789	1473 bp upstream
Tssr21790	transcription start site region 21790	1871 bp upstream
Tssr27731	transcription start site region 27731	1273 bp upstream
Tssr27732	transcription start site region 27732	1215 bp upstream
Tssr27733	transcription start site region 27733	1168 bp upstream
Tssr27734	transcription start site region 27734	912 bp upstream
Tssr27735	transcription start site region 27735	886 bp upstream
Tssr27736	transcription start site region 27736	506 bp upstream
Tssr27737	transcription start site region 27737	495 bp upstream
Tssr27738	transcription start site region 27738	450 bp upstream
Tssr27739	transcription start site region 27739	266 bp upstream
Tssr27740	transcription start site region 27740	1216 bp downstream
Tssr27741	transcription start site region 27741	1265 bp downstream
Tssr27742	transcription start site region 27742	1390 bp downstream
Tssr27743	transcription start site region 27743	1522 bp downstream
Tssr27744	transcription start site region 27744	1639 bp downstream
Zfas1	zinc finger, NFX1-type containing 1, antisense RNA 1	1592 bp upstream
Znfx1	zinc finger, NFX1-type containing 1	within coordinates