rs251723121 SNP Detail

Summary

• ID
  rs251723121
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:108638282 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTCGGGAGT CACGGCTTTT
  TCTGACCTCT CTCCCTGCAG GATGGATTTT GCCCACATGT ACCAAGTGTA CAAGTCCAGG
  CGGGGAATAA AACGGAGCGA AGACAGCAAG GTAGGTGCAT CCCTGGGAAC CTCATTCCTT
  AGCCCCTCGT GTGCGCTGAG TTTCCAAGAA AAGTTTGCTT GTTTCAAGGT TGGCTGGGGG
  R
  TTCAAGATGA GATGAGCTCA TTGCCACAAA TGAGTGACTT GGGAAAGAAG GGGCAGAGAA
  GGTGAATCTG GGTGCGTCTC TGCGCCCTCG CAGAATTTTT CCCCCCTGCT ACCGGTTGGG
  AAGGAAGGGA GGAAGCTTCG TTCCCTTCCC CGGGCACCCA TTGCTTCCAT GTATTCCATG
  CAGGAAACTT ACAAACTGCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss369592109	MGP_WTSI_6_108611315	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs251723121					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss369592109	MGP_WTSI_6_108611315	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:108638282 () rs orientation: forward

Symbol	Name	Function Class
0610040F04Rik	RIKEN cDNA 0610040F04 gene	387 bp upstream
4833447P13Rik	RIKEN cDNA 4833447P13 gene	1781 bp upstream
Bhlhe40	basic helix-loop-helix family, member e40	within coordinates
Cpgi17812	CpG island 17812	within coordinates
Gm17055	predicted gene 17055	1728 bp downstream
Rr399817	regulatory region 399817	261 bp upstream
Rr636155	regulatory region 636155	1384 bp distal
Rr636156	regulatory region 636156	437 bp distal
Rr636157	regulatory region 636157	576 bp distal
Rr636158	regulatory region 636158	within coordinates
Rr636159	regulatory region 636159	282 bp proximal
Tssr58071	transcription start site region 58071	1654 bp downstream
Tssr58072	transcription start site region 58072	875 bp downstream
Tssr58073	transcription start site region 58073	824 bp downstream
Tssr58074	transcription start site region 58074	787 bp downstream
Tssr58075	transcription start site region 58075	639 bp downstream
Tssr58076	transcription start site region 58076	534 bp downstream
Tssr58077	transcription start site region 58077	455 bp downstream
Tssr58078	transcription start site region 58078	426 bp upstream
Tssr58079	transcription start site region 58079	669 bp upstream
Tssr58080	transcription start site region 58080	1018 bp upstream
Tssr58081	transcription start site region 58081	1449 bp upstream
Tssr58082	transcription start site region 58082	1798 bp upstream
Tssr62390	transcription start site region 62390	1899 bp upstream
Tssr62391	transcription start site region 62391	1498 bp upstream