rs251732429 SNP Detail

Summary

• ID
  rs251732429
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:81004307 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTGTGGGTT TTTAAAAATT
  GTTTTTGTTT TTTGAGACAG GTTCACCATG TAGCCCTGGC TCTGTGGAAC TCGCTTTGTA
  GACCAGACTG GCCTCAAACT CACTGAAATC CTCCTGCCCC TGCTTCCGGA GAACTGAGAT
  TAAAGATGAA CATAACCAAG CCCTGCGTAG CCTTGCTTCT TTAGGGCACA GAAGCCCCTC
  Y
  AGCTGCATTT TTCCTTCTTT ATTTGTTGGC TCAAGGCTAC GCCCACTTTT CTGTGGTCTG
  TTTTATTTAT ATACTGGGGG AGACACGCAA TTTTTGATCG TCCAAAGACA ATCTAAGGGG
  TTTGTATATT TCCACAATAT GGATTCAGGG AATCGAACTC AGGTCATCAG GTTTAGAGAC
  TAACGCGAAT AGGTGTGGGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss381031913	MGP_WTSI_10_80631218	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	C	T	T	C	T	T	T	T	C	T	C	T	T	T	C	T	T	T	T	T	T	C	C	T	T	T	T	T	T	C	T	T	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs251732429					SNP	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	C	T	T	C	T	T	T	T	C	T	C	T	T	T	C	T	T	T	T	T	T	C	C	T	T	T	T	T	T	C	T	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss381031913	MGP_WTSI_10_80631218	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:81004307 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1946	CpG island 1946	430 bp distal
Cpgi1947	CpG island 1947	406 bp proximal
Pias4	protein inhibitor of activated STAT 4	753 bp upstream
Rr402075	regulatory region 402075	431 bp downstream
Rr402076	regulatory region 402076	329 bp upstream
Rr402077	regulatory region 402077	1010 bp upstream
Rr435533	regulatory region 435533	561 bp distal
Rr435534	regulatory region 435534	60 bp distal
Rr435535	regulatory region 435535	260 bp proximal
Rr435536	regulatory region 435536	941 bp proximal
Tssr94693	transcription start site region 94693	433 bp downstream
Tssr98565	transcription start site region 98565	719 bp upstream
Tssr98566	transcription start site region 98566	692 bp upstream
Tssr98567	transcription start site region 98567	624 bp upstream
Tssr98568	transcription start site region 98568	568 bp upstream
Tssr98569	transcription start site region 98569	407 bp downstream