rs251734790 SNP Detail

Summary

• ID
  rs251734790
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:27385984 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCTCGGCCT TGGAAAACAG
  AACACTTGTT AACAGTGCCA TGCTGATAAC TACTCTCAGA CTTCAGGTGG CTCTGTCCCG
  GGAAACAAAG CATCACGGGA TGGGTTGCCA CGACCACTAG GTGTCCCATA CCTGAGACAC
  AGGCCTCCGT TTCAAAACAG TCCATTCAAA CAAGGGTGTT ACAGAACAAA TGGGAACAAC
  Y
  GATACCCACA ACATATGTAC AAGAGCAAAA GTAGACAAAG TGGGGAGTCC ATGACAATGG
  CATAGGACGC TTCTCCCTGT GTGATTCAGG GGACGAGGCA TAAGGTTTTT GAACACAAGC
  TGGGTGAAGA GAAATGGGAT CGAGGGCCCT TTGTCAATAT CCATTTGATC AAAATTCTTT
  TTACGCTATG TCTTGATTAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss385383287	MGP_WTSI_12_28020850	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs251734790					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss385383287	MGP_WTSI_12_28020850	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:27385984 () rs orientation: forward

Symbol	Name	Function Class
Rr464223	regulatory region 464223	1998 bp distal
Rr464224	regulatory region 464224	within coordinates
Rr464225	regulatory region 464225	927 bp proximal
Rr464226	regulatory region 464226	1809 bp proximal
Sox11	SRY (sex determining region Y)-box 11	within coordinates
Tssr113042	transcription start site region 113042	228 bp upstream
Tssr113043	transcription start site region 113043	384 bp upstream
Tssr115960	transcription start site region 115960	1206 bp upstream
Tssr115961	transcription start site region 115961	841 bp upstream
Tssr115962	transcription start site region 115962	400 bp upstream
Tssr115963	transcription start site region 115963	68 bp downstream
Tssr115964	transcription start site region 115964	419 bp downstream
Tssr115965	transcription start site region 115965	482 bp downstream
Tssr115966	transcription start site region 115966	571 bp downstream
Tssr115967	transcription start site region 115967	843 bp downstream
Tssr115968	transcription start site region 115968	857 bp downstream
Tssr115969	transcription start site region 115969	934 bp downstream
Tssr115970	transcription start site region 115970	959 bp downstream
Tssr115971	transcription start site region 115971	1002 bp downstream
Tssr115972	transcription start site region 115972	1136 bp downstream
Tssr115973	transcription start site region 115973	1502 bp downstream
Tssr115974	transcription start site region 115974	1550 bp downstream
Tssr115975	transcription start site region 115975	1590 bp downstream
Tssr115976	transcription start site region 115976	1612 bp downstream
Tssr115977	transcription start site region 115977	1626 bp downstream