rs251736295 SNP Detail

Summary

• ID
  rs251736295
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:21873072 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAGCAGCCC CGCGGGGGCG
  TCCAGGAGCA CTGCAGAAAG TGAAATGGAT CCTGTAGGCG GGGACCCAGT TCGGTCCCCA
  CCCCATCGAT GTCGCTCCCA TCCCCTCTCA CCTACCTACT TCATTGATAT GGATGATGCG
  GTGATAGCGA GGAGAACCGG ACGCCTCCGT CACCTGCAGC TCCAGCGGCA CAAAACTCGA
  Y
  GTGTCCGCTG TTGGCAGTGA ACACCAGAAA CGCACGGAGC CGCGGACGGT GGGAGCCTGG
  TGCAGGCTAC ATGACTTTCG TGACTCACCC CTGTGCGATC GGGGGAACCA AGAAGAAAAG
  GTTGAACAAG TAGGGAGGGC AGGAGGTGAT TGGAGAGTTT CGGATTTCTT TGGTCCACAT
  CGTGGGGACC AGAGCATTTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss376877717	MGP_WTSI_9_21766220	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs251736295					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss376877717	MGP_WTSI_9_21766220	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:21873072 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21464	CpG island 21464	866 bp distal
Cpgi21465	CpG island 21465	within coordinates
Epor	erythropoietin receptor	within coordinates
Rr675079	regulatory region 675079	919 bp distal
Rr675080	regulatory region 675080	238 bp distal
Rr675081	regulatory region 675081	204 bp distal
Rr675082	regulatory region 675082	1720 bp proximal
Tssr2805	transcription start site region 2805	533 bp downstream
Tssr88426	transcription start site region 88426	565 bp downstream
Tssr88427	transcription start site region 88427	610 bp downstream
Tssr88428	transcription start site region 88428	1767 bp downstream
Tssr88429	transcription start site region 88429	1792 bp downstream
Tssr88430	transcription start site region 88430	1819 bp downstream