rs251742884 SNP Detail

Summary

• ID
  rs251742884
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:129205281 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CAGTAATTGG TGTGGTATGG AGCCAACATT TTCTTTTTTC
  TGTTGTTTAT TCTCTCACTC TTTCTTCCTT TCTCCCCCCC CCCCCCCGCC TTATATAAGC
  G
  CTAGGGATTG AATCTAGGAC CTTGTGAATA CTAGGCAAGT ATATGCTTAC TAGACCAGCA
  TAGTCCTGTA TCCCCAGACC TTGTTTTACC TTTTATATT                       
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321948746	CHEV_6_129178336	CHEVERUD	SCREENING_POP	f	SNP	G	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs251742884					SNP	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:129205281 () rs orientation: forward

Symbol	Name	Function Class
Gm38906	predicted gene, 38906	555 bp downstream
Gm47861	predicted gene, 47861	within coordinates
Rr399972	regulatory region 399972	1009 bp upstream
Tssr59119	transcription start site region 59119	1058 bp upstream
Tssr59120	transcription start site region 59120	1077 bp upstream
Tssr63549	transcription start site region 63549	769 bp downstream
Tssr63550	transcription start site region 63550	919 bp downstream
Tssr63551	transcription start site region 63551	1944 bp downstream