rs251770539 SNP Detail

Summary

• ID
  rs251770539
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:4169122 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    GCTGTTGAT GAATTGTttt gttggtgata
  gcagggattg aacctagggc cacttgcctg ctagttaagc cctggacaac tgagctataA
  ACCACTCCCT CCTGTAGGCA CACTGTGTGC ACAGTGTCGA GATTATCCTC TACCTGGTAC
  Y
  CTGCtcttca gacagggtct ctcattaatt agctcaggct gagcttgagt tcacttcctt
  tcacttcagt gtcctggata gctgaggtga caatgtctca ctatgtagct ctggctggcc
  tggaacttgc tatgtcaatc attttattct                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322093646	CHEV_7_4117725	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs251770539					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:4169122 () rs orientation: forward

Symbol	Name	Function Class
Cdc42ep5	CDC42 effector protein 5	1292 bp upstream
Gm73056	predicted gene, 73056	within coordinates
Rr641924	regulatory region 641924	1274 bp distal
Rr641925	regulatory region 641925	773 bp distal
Rr641926	regulatory region 641926	228 bp proximal
Rr641927	regulatory region 641927	651 bp proximal
Tssr70452	transcription start site region 70452	1857 bp upstream
Tssr70453	transcription start site region 70453	1547 bp upstream
Tssr70454	transcription start site region 70454	1448 bp upstream
Tssr70455	transcription start site region 70455	1408 bp upstream
Tssr70456	transcription start site region 70456	1382 bp upstream
Tssr70457	transcription start site region 70457	1296 bp upstream
Tssr70458	transcription start site region 70458	1062 bp upstream