rs251776557 SNP Detail

Summary

• ID
  rs251776557
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:70702149 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAACCCCCGC GGTAGCATCC
  CTTGCTCCGC GTGGACCACT TTCCTGAGGC ACAGTGATAG GAACAGAGCC ACTAATCTGA
  AGAGAACAGA GATGTGACAG ACTACACTAA TGTGAGAAAA ACAAGGAAAG GGTGACTTAT
  TGGAGATTTC AGAAATAAAA TGCATTTATT ATTATATTCC CTTATTTTAA TTTTCTATTA
  R
  GGAATTAGAA AGGGCATAAA CTGCTTTATC CAGTGTTATA TTAAAAGCTT AATGTATATA
  ATCTTTTAGA GGTAAAATCT ACAGCCAGCA AAAGTCATGG TAAATATTCT TTGACTGAAC
  TCTCACTAAA CTCCTCTAAA TTATATGTCA TATTAACTGG TTAAATTAAT ATAAATTTGT
  GACATGACCT TAACTGGTTA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss368707591	MGP_WTSI_6_70675159	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs251776557					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss368707591	MGP_WTSI_6_70675159	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:70702149 () rs orientation: forward

Symbol	Name	Function Class
Gm68839	predicted gene, 68839	1281 bp downstream
Igk	immunoglobulin kappa chain complex	within coordinates
Igkc	immunoglobulin kappa constant	1270 bp upstream
Igkj3	immunoglobulin kappa joining 3	1905 bp downstream
Igkj4	immunoglobulin kappa joining 4	1580 bp downstream
Igkj5	immunoglobulin kappa joining 5	1242 bp downstream
Rr158	regulatory region 158	786 bp proximal
Rr150202	regulatory region 150202	within coordinates
Rr399684	regulatory region 399684	within coordinates
Rr399685	regulatory region 399685	382 bp upstream
Rr399686	regulatory region 399686	1346 bp upstream
Tssr1880	transcription start site region 1880	1685 bp upstream
Tssr56953	transcription start site region 56953	1618 bp downstream
Tssr56954	transcription start site region 56954	1486 bp downstream
Tssr56955	transcription start site region 56955	1265 bp downstream
Tssr56956	transcription start site region 56956	643 bp upstream
Tssr56957	transcription start site region 56957	1265 bp upstream
Tssr56958	transcription start site region 56958	1312 bp upstream
Tssr56959	transcription start site region 56959	1330 bp upstream
Tssr56960	transcription start site region 56960	1353 bp upstream
Tssr56961	transcription start site region 56961	1367 bp upstream
Tssr56962	transcription start site region 56962	1375 bp upstream
Tssr56963	transcription start site region 56963	1424 bp upstream
Tssr56964	transcription start site region 56964	1439 bp upstream
Tssr56965	transcription start site region 56965	1445 bp upstream
Tssr56966	transcription start site region 56966	1456 bp upstream
Tssr56967	transcription start site region 56967	1471 bp upstream
Tssr56968	transcription start site region 56968	1495 bp upstream
Tssr56969	transcription start site region 56969	1531 bp upstream
Tssr56970	transcription start site region 56970	1544 bp upstream
Tssr56971	transcription start site region 56971	1564 bp upstream
Tssr56972	transcription start site region 56972	1590 bp upstream
Tssr56973	transcription start site region 56973	1628 bp upstream
Tssr56974	transcription start site region 56974	1660 bp upstream
Tssr56975	transcription start site region 56975	1693 bp upstream
Tssr61321	transcription start site region 61321	1317 bp downstream
Tssr61322	transcription start site region 61322	1482 bp downstream
Tssr61323	transcription start site region 61323	1497 bp downstream
Tssr61324	transcription start site region 61324	1587 bp downstream
Tssr61325	transcription start site region 61325	1653 bp downstream
Tssr61326	transcription start site region 61326	1688 bp downstream
Tssr61327	transcription start site region 61327	1702 bp downstream
Tssr61328	transcription start site region 61328	1793 bp downstream