rs251790488 SNP Detail

Summary

• ID
  rs251790488
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:87052146 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACCCCTTCT AAGAAAACAG
  CCTCAAAGGA CCTAGTCACC TCTCCCTTCC ATCACCTCCC AACATCATCA TCACACTAGG
  GACCAAGCCT GCAACTTGTG CACTTCAGGG ACAGGCTCCA TCCATATTCA AGCCACAGCA
  CATGGTTGCT CTTGTTGGAG GCTGCTGTGC GATGTTTGTC TCAACATAGA AGATAGAGCT
  Y
  TGCCTGCAAC CCCATCTTAA ACAGACAGCG AAGAGAAAGC ATCCCAAGTA CTTGCCCAGG
  TCAAGCTTAA TGGGGGGCCA AGTAGACAGC AGGACATTCA GTGTGCCTTG TTTCCTTTGT
  CTTTTGGCTC CAGGTATCAG CAAGCCAAAC AAAGGCCCCT CATCTAAGCT GTGTTCTTCC
  AGGCCTACCT CCAGCGCCCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss350380262	MGP_WTSI_1_89020999	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs251790488					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss350380262	MGP_WTSI_1_89020999	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:87052146 () rs orientation: forward

Symbol	Name	Function Class
Akp3	alkaline phosphatase 3, intestine, not Mn requiring	549 bp upstream
Tssr145	transcription start site region 145	1920 bp upstream
Tssr7781	transcription start site region 7781	522 bp upstream
Tssr7782	transcription start site region 7782	972 bp upstream
Tssr7783	transcription start site region 7783	1264 bp upstream
Tssr7784	transcription start site region 7784	1507 bp upstream
Tssr7785	transcription start site region 7785	1543 bp upstream
Tssr7786	transcription start site region 7786	1573 bp upstream
Tssr7787	transcription start site region 7787	1899 bp upstream
Tssr12838	transcription start site region 12838	1294 bp downstream
Tssr12839	transcription start site region 12839	1309 bp downstream
Tssr12840	transcription start site region 12840	1322 bp downstream