rs251792826 SNP Detail

Summary

• ID
  rs251792826
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:34725427 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTTTTCACT ATTCAGTTTC
  ATCATCATCG TTATTATTTA GCTTTTTGAG ACAGGGTCTC TATGTAGCCC TGACTGTCTT
  GGAACTCTCC CTGCAGACCG GACAAGCGAT GAACTCACAG AGATCCTCCA GCCTCTGCCT
  CGGGAGTGCT GGGATTAGTT TGTTATATTG TACAGTAAAT TGTCTCTTGA CAAGATCACC
  R
  GCGTTTCTTT TTGTTTTTGT TTGTTTTATC ATGAGGCCAA TCCTGCACTG TACCCCAGTG
  ATTTTTTACC TTCAGTGTCC AGTAGTCAGT GTTTATTTTT CCCCTTTCCT GCATTGCCTC
  CATTGAGTTT TAATATCTTG ATGCTCCACA CCCTTTGACT TTCTCACTTC ATTTTCATTT
  GTAGACCGTT ATTTCTGATG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss382963820	MGP_WTSI_11_34648102	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs251792826					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss382963820	MGP_WTSI_11_34648102	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:34725427 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2724	CpG island 2724	585 bp distal
Gm57348	predicted gene, 57348	within coordinates
Rr402479	regulatory region 402479	794 bp downstream
Rr444978	regulatory region 444978	970 bp distal
Rr444979	regulatory region 444979	886 bp distal
Rr444980	regulatory region 444980	267 bp distal
Rr444981	regulatory region 444981	1218 bp proximal
Rr444982	regulatory region 444982	1622 bp proximal
Rr444983	regulatory region 444983	1865 bp proximal
Spdl1	spindle apparatus coiled-coil protein 1	959 bp upstream
Tssr100930	transcription start site region 100930	828 bp downstream
Tssr100931	transcription start site region 100931	809 bp downstream
Tssr107398	transcription start site region 107398	1004 bp upstream
Tssr107399	transcription start site region 107399	974 bp upstream
Tssr107400	transcription start site region 107400	937 bp upstream