rs251798601 SNP Detail

Summary

• ID
  rs251798601
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:24024128 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGGGTCCAA GAGGGAGGGG
  AAAAGGAGGA ACATACAGAG ACAGCGGGTA AGGAGAGGGA GGAGAAGAAA GAGAGGGAGA
  GGAGAGACTG GAAACTGAAG AGTTTGTGCT AGATCACCAT AGGAATTGGT GGAGACAATA
  GCAGCTGTGG AGACAGATCC AAGAAACACA TACTATAAAG GAATGTTTTT AAAACTTTTA
  Y
  GTAGTCACAT AAAATCATGT ATGTGTGTAG AAGTGACTTG TCCAGAGAAT CAAGGGAGGT
  AGATCTACCA TACCCAACAG AACTTGTTAT TTAAAAAAAA AAATTGAATG AGAGAGACAG
  AGACAGAGAC AGACAGAGAC AGAGAGAAAC AGACAGAGAG AGAATGGTAA GGGGAAAGTC
  AAAGTGTCTC ATGAACAAAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324292299	CHEV_13_23932014	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs251798601					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:24024128 () rs orientation: forward

Symbol	Name	Function Class
Gm56568	predicted gene, 56568	1746 bp downstream
Rr475960	regulatory region 475960	686 bp distal
Rr475961	regulatory region 475961	603 bp distal
Slc17a3	solute carrier family 17 (sodium phosphate), member 3	within coordinates
Tssr4011	transcription start site region 4011	517 bp downstream
Tssr4012	transcription start site region 4012	413 bp downstream
Tssr118875	transcription start site region 118875	703 bp downstream
Tssr118876	transcription start site region 118876	675 bp downstream
Tssr118877	transcription start site region 118877	558 bp downstream
Tssr118878	transcription start site region 118878	525 bp downstream