rs251800343 SNP Detail

Summary

• ID
  rs251800343
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:112977406 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTTTCAATA AGCTTACTAG
  AAGATAATAA GACATGGAAC CTAGCGGGAG AAAGGCAATT GTGTAAAGCC GTGGATACAA
  AGAAACAAGA CATGCCAGAA AAGCTTTTCC CTAAATTTGT TGACTTTGAC CAAAGACAGC
  CAAAAAGAGG GGGAGGGACA TCTGCCACTG AGAGCTTCTT CCTGAGGCCC AGAGCCTAGC
  Y
  GGCCTTCTCC AGGCCATGCC TGGAATCCCC TGCCTACTGG GCCCTGCAGT CTGATCGGCC
  ACCCGCCCCT CCTATTGGCC CAAGTTCACT GCGAGCAAGG GAGAATGCAC CCTGTACCAA
  ATATTTGAGA TGCTCTTGAG AAAAACTTAA AAATAAATAA ATAAAGCACT GCTGAATATA
  GGAGGAGGCT GGATGGGCGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss387397466	MGP_WTSI_12_114251997	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs251800343					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss387397466	MGP_WTSI_12_114251997	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:112977406 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5198	CpG island 5198	within coordinates
Gm61130	predicted gene, 61130	within coordinates
Pacs2	phosphofurin acidic cluster sorting protein 2	722 bp upstream
Rr473705	regulatory region 473705	1489 bp distal
Rr473706	regulatory region 473706	within coordinates
Rr473707	regulatory region 473707	512 bp proximal
Rr473708	regulatory region 473708	578 bp proximal
Rr473709	regulatory region 473709	896 bp proximal
Tssr115451	transcription start site region 115451	599 bp upstream
Tssr115452	transcription start site region 115452	716 bp upstream
Tssr115453	transcription start site region 115453	729 bp upstream
Tssr115454	transcription start site region 115454	760 bp upstream
Tssr115455	transcription start site region 115455	773 bp upstream
Tssr117933	transcription start site region 117933	438 bp downstream