rs251805555 SNP Detail

Summary

• ID
  rs251805555
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:98813550 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCGTA TCTCTCTTCC TCCCTCCCCC
  S
  CTCCCGTTTA AAGTTTTACC TTGAA                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321222364	CHEV_4_98592004	CHEVERUD	SCREENING_POP	f	SNP	G	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs251805555					SNP	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:98813550 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14474	CpG island 14474	441 bp distal
Rr398351	regulatory region 398351	1801 bp downstream
Rr595806	regulatory region 595806	1424 bp distal
Rr595807	regulatory region 595807	1682 bp distal
Rr595808	regulatory region 595808	188 bp distal
Rr595809	regulatory region 595809	17 bp proximal
Tssr37902	transcription start site region 37902	1637 bp downstream
Tssr37903	transcription start site region 37903	1570 bp downstream
Tssr37904	transcription start site region 37904	1536 bp downstream
Tssr37905	transcription start site region 37905	1471 bp downstream
Tssr37906	transcription start site region 37906	1420 bp downstream
Tssr37907	transcription start site region 37907	1337 bp downstream
Usp1	ubiquitin specific peptidase 1	Intron