rs251807561 SNP Detail

Summary

• ID
  rs251807561
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:127128122 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCGGAGCCTC AAGGGCCGCC
  TGACTCGCAC CGGTCCTTCC CTCCGAACTG CCCGGCTCTC CTCAGCTCGC TCTCCTCTCT
  CGCTCAGGCA GTGACGCAAG CTGGAAGGGC AGTTAGATCT CCTCCCCCTC TCAGGTTCCT
  CCTCCCCCTT TCCTCCCCTC CTCTAGCGTC CCTCCCCTCC TTTCAATCTT TCCCTCCCTC
  Y
  CCCCCCCCCC TTCCCTCTTG TTATTAAGGA GCACAGCAGC TGGCCTGACC AAACTTCAAA
  CACGATCCCC GCTCCCCACC CCCAACCCCT CTCCCTACTT CTCCGAGGCC CTCTCCCCAT
  CCAGCCCCGC ATGCTAGGGG CCTCGGATAG GGGAACCCAC AAACCCCATG GATTCCTATT
  GATTATCCTT TCTGACATTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/10J	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ
ss369997143	MGP_WTSI_6_127101177	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/10J	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ
rs251807561					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss369997143	MGP_WTSI_6_127101177	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:127128122 () rs orientation: forward

Symbol	Name	Function Class
9330179D12Rik	RIKEN cDNA 9330179D12 gene	within coordinates
Ccnd2	cyclin D2	within coordinates
Cpgi18033	CpG island 18033	1598 bp distal
Cpgi18034	CpG island 18034	79 bp distal
Cpgi18035	CpG island 18035	476 bp proximal
Cpgi18036	CpG island 18036	1601 bp proximal
Gm56941	predicted gene, 56941	1884 bp downstream
Rr145781	regulatory region 145781	within coordinates
Rr399942	regulatory region 399942	1278 bp upstream
Tssr59020	transcription start site region 59020	1734 bp downstream
Tssr59021	transcription start site region 59021	916 bp downstream
Tssr59022	transcription start site region 59022	1410 bp upstream
Tssr63371	transcription start site region 63371	1532 bp upstream
Tssr63372	transcription start site region 63372	1509 bp upstream
Tssr63373	transcription start site region 63373	1496 bp upstream
Tssr63374	transcription start site region 63374	483 bp upstream
Tssr63375	transcription start site region 63375	145 bp upstream
Tssr63376	transcription start site region 63376	120 bp upstream
Tssr63377	transcription start site region 63377	104 bp upstream
Tssr63378	transcription start site region 63378	1299 bp downstream