rs251827643 SNP Detail

Summary

• ID
  rs251827643
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:108887563 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGACAGATG CTGAGCAGGG
  TTAGAACATC ACCTTCAGCA GTATGTGAGT CTGTCGGTGC TTGCCAGTAC AGGCGGGTGT
  AGATGCTGCC CAGGCTGTAG CTTTTCCTCG AACCATTCCC TGAGGGGCTG CTAGCTTGTT
  CCAAGGCCTT TAGGGCAGCG ATGCTGTCCA CACAGAAGGT ACCATCTAGG GGACTGGGAG
  Y
  GCTCAGCCTA GCAAGCTCTG TCTGGAGCAG AGGAAAGTCA TAGCGGTCAC CGTTGTGTGC
  CACAAGGCAG CAAGGCTGTG GCTGGCGCTG CAGGAAGGCT CGGAGCAGGA TGGCCAGGTT
  GTCATCGAAG CGTTGACGCC CCTGTACTTC CAGCTCAGCT TTGCTCAGAC CTGTGATCTC
  ACTGGCCCCA GGGCTACAGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss378877930	MGP_WTSI_9_108961009	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs251827643					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss378877930	MGP_WTSI_9_108961009	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:108887563 () rs orientation: forward

Symbol	Name	Function Class
Atrip	ATR interacting protein	1252 bp downstream
Gm53191	predicted gene, 53191	within coordinates
Rr401693	regulatory region 401693	1124 bp upstream
Rr686956	regulatory region 686956	630 bp distal
Rr686957	regulatory region 686957	746 bp proximal
Rr686958	regulatory region 686958	1167 bp proximal
Rr686959	regulatory region 686959	1313 bp proximal
Shisa5	shisa family member 5	718 bp downstream
Trex1	three prime repair exonuclease 1	within coordinates
Tssr87218	transcription start site region 87218	1775 bp downstream
Tssr87219	transcription start site region 87219	1542 bp downstream
Tssr87220	transcription start site region 87220	1454 bp downstream
Tssr87221	transcription start site region 87221	1235 bp downstream
Tssr87222	transcription start site region 87222	1186 bp downstream
Tssr91571	transcription start site region 91571	772 bp upstream
Tssr91572	transcription start site region 91572	224 bp upstream
Tssr91573	transcription start site region 91573	90 bp upstream
Tssr91574	transcription start site region 91574	128 bp downstream
Tssr91575	transcription start site region 91575	179 bp downstream
Tssr91576	transcription start site region 91576	264 bp downstream
Tssr91577	transcription start site region 91577	721 bp downstream
Tssr91578	transcription start site region 91578	1181 bp downstream
Tssr91579	transcription start site region 91579	1216 bp downstream