rs251831624 SNP Detail

Summary

• ID
  rs251831624
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr9:31122059 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAATTAGAAC ATTCTCAGGT
  CATGCCTATT TTATCAAACG CAATCTCTGA CACTGGCTCA ACGTACAGAA AGCCACGGTG
  GGTTTTTTTT TTTTTTTTAA TACAAGCAGG CGCAAGAAGA AATAAACAAC ACCAGAAACA
  CACAGTCCAG TCCTACAGTT CAAGCATTAT TTCGAGAAAG TAAGTAAAAA TAAAGTCCCA
  Y
  GTCTCCCTAG GCGACAGAGG GTTCTTGCGG GGAGGCTAGG TGCAGAGCAA GCTGCAGTAC
  GGGTTCCACA TCCGACATCC TGGCTCTTCC AGCGGCCTGA ACTCCCGCCA ACCACCTGGG
  ACCCTAGACG ACTTCACCAG GTTAACGGGG GTGACCTCTG GTGCAGAACA ATCACTGTGA
  CCCTGACCCA CGTAAAGTAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322889594	CHEV_9_31018348	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs251831624					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:31122059 () rs orientation: forward

Symbol	Name	Function Class
Aplp2	amyloid beta precursor-like protein 2	Intron
Gm69111	predicted gene, 69111	1261 bp upstream
Rr401293	regulatory region 401293	959 bp upstream
Rr675968	regulatory region 675968	within coordinates
Rr675969	regulatory region 675969	148 bp proximal
Rr675970	regulatory region 675970	1014 bp proximal
Rr675971	regulatory region 675971	1228 bp proximal
Rr675972	regulatory region 675972	1272 bp proximal
Tssr84218	transcription start site region 84218	571 bp upstream
Tssr88644	transcription start site region 88644	1149 bp upstream
Tssr88645	transcription start site region 88645	1042 bp downstream