rs251839779 SNP Detail

Summary

• ID
  rs251839779
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:127869256 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCTAGCCCA AGGCCTGAAC
  TACCCTTCTC CTTCCCACAG AGACTCTTCC CTGTATAATC CAGACGTTTT GATTACCCAC
  CCTTTTTGTA CCTTTGGGTT CCAGGCTGCT ACACCTGGTT CCCTCTCTCC CTCTCCTTTT
  CCCTCCCCTT ACATGGGCAA GCTCAGTCTG ATCATGTCCT CTGGACTGGG AATCCCTCGG
  Y
  CTCTGGCTAT GTTCTCCTAC ATATCTGTAA TGAACTTTAT CCTCCTCCAT ACCTAGGGGC
  AGTCATAGTC TTTCCTTCTT ATTTCTTTTT CATTCTTTAT GTGTTCTTGA TGTGTGTGTA
  CTGTTCTCTT CTTCCTTTCC ATGGATAACC TTCCAAGGAT GGAAGGATGC CCAACCTGCA
  CAAGTGCCTA AACCGGCTGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323531422	CHEV_10_127470443	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs251839779					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:127869256 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2380	CpG island 2380	1881 bp proximal
Gm66417	predicted gene, 66417	within coordinates
Gm66418	predicted gene, 66418	240 bp upstream
Rr224438	regulatory region 224438	1344 bp proximal
Rr385474	regulatory region 385474	1426 bp upstream
Tssr96285	transcription start site region 96285	117 bp downstream
Tssr96286	transcription start site region 96286	35 bp downstream
Tssr96287	transcription start site region 96287	212 bp upstream
Tssr96288	transcription start site region 96288	245 bp upstream
Tssr96289	transcription start site region 96289	296 bp upstream
Tssr96290	transcription start site region 96290	1943 bp upstream
Tssr96291	transcription start site region 96291	1952 bp upstream
Tssr96292	transcription start site region 96292	1976 bp upstream