rs251852296 SNP Detail

Summary

• ID
  rs251852296
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:31426637 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGACACTGCC AACTGTCCTT
  TACAAAGGTG GCTGTAGAAC TTAAATGCTG TGGGATTTAC ATTATTGTTT CATTGGTTCT
  GGAGGAGAGA GGGAGTCGAG TCACTTTACG GAAATCCCTC ATGCTACATA CGTAGTGCTT
  AATGTTTAAA GTTCTCACTT CAAAACAACA ACAACAGCAG GTCAATTAAA TCTTTTTTTT
  W
  AAAAAGTTTT TATAAGCAAG CAGGGAGAGT ACATACAGTG AATACCAGTG TTCAGTCTGT
  AGACACGGAG GCTAAGGTCC AGGATGGCGA GGGTGGGTGC TCGGCAGAAC CCATGAGAGA
  AGCCTGTTCC AGACTCCTGC TCCCTCCTTC TGCTCCTCCC TCCCCCACAC TCCCAGGTCC
  TCCTCCCAAG TGCTTCCCAA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325358917	CHEV_17_31344608	CHEVERUD	SCREENING_POP	f	SNP	T	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs251852296					SNP	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:31426637 () rs orientation: forward

Symbol	Name	Function Class
Rr339574	regulatory region 339574	within coordinates
Rr370214	regulatory region 370214	158 bp upstream
Tssr143654	transcription start site region 143654	386 bp upstream
Tssr147277	transcription start site region 147277	1134 bp downstream
Tssr147278	transcription start site region 147278	1150 bp downstream
Ubash3a	ubiquitin associated and SH3 domain containing, A	210 bp upstream