rs251871416 SNP Detail

Summary

• ID
  rs251871416
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:102210095 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCGCTCCGAG CGCTCGCCCG
  TCAGAGCCGC CTTGGCGCCG CCGCCTCCCG GGCCGCCCCG GCCTCGCCTG GCCCCTCCGC
  CTCCTCCGGG CGGCTCAGCC TCACCCCTTC CCTCCCACCG CTCGGGGGCT GCACGAAATT
  TTAAAAAAAG GAATAGTAAA AAAAAAAAAA AAAAATGTTT TTTGCTTTTT TTTTTTTTTC
  Y
  AAGGCAGATG TTTTTCGACA TTTAGCTCTT TTTTGGCTCC CAGCTCCCAC TCACCTGCGG
  GGCCTCCGGC AGGGCTGGGG GCGGGGGTGC GCGGGGCTGG AGCCGCCGAG CGCGGGTTGA
  AAGCTAGCCA AGCTCTGCAG CGCCCGACCC GGGCGTGTAC GCCGCCGCCA GTCCCCGCAG
  AGAAATCGTC CTCCTACCCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss384500235	MGP_WTSI_11_102180583	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs251871416					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss384500235	MGP_WTSI_11_102180583	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:102210095 () rs orientation: forward

Symbol	Name	Function Class
C030013E06Rik	RIKEN cDNA C030013E06 gene	490 bp downstream
Cpgi3917	CpG island 3917	within coordinates
Rr245873	regulatory region 245873	within coordinates
Tssr111027	transcription start site region 111027	1627 bp upstream
Tssr111028	transcription start site region 111028	1484 bp upstream
Tssr111029	transcription start site region 111029	1453 bp upstream
Tssr111030	transcription start site region 111030	1392 bp upstream
Tssr111031	transcription start site region 111031	1208 bp upstream
Tssr111032	transcription start site region 111032	265 bp upstream
Tssr111033	transcription start site region 111033	164 bp upstream
Tssr111034	transcription start site region 111034	73 bp downstream
Tssr111035	transcription start site region 111035	113 bp downstream
Tssr111036	transcription start site region 111036	556 bp downstream
Tssr111037	transcription start site region 111037	996 bp downstream
Ubtf	upstream binding transcription factor, RNA polymerase I	within coordinates