rs251878429 SNP Detail

Summary

• ID
  rs251878429
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:21880557 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    cccccgtga ccctcttgtt tctatttctg
  gaactactac tggcttttaa tgtgggtgtt gggtgctggg gatccgagct caggtcccct
  tgcatgcaca gcaagataag ggttcttact cactgagccT CCGATTCTAT CTTTATTATC
  Y
  TGTTTGCCTC ACCCTGTAGT TTAGCCTCAA ACTGGTCTCT ATTAttatta tttcaagaca
  gggtttttct gtattgccct tgctgtcctg gaactctctc tgtagaccag gctggcctcg
  aattcagaaa tccacctgcc tctgcctccc                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324566725	CHEV_14_22649711	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs251878429					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:21880557 () rs orientation: forward

Symbol	Name	Function Class
Cpgi6221	CpG island 6221	432 bp proximal
Rr296889	regulatory region 296889	within coordinates
Tssr124454	transcription start site region 124454	1030 bp upstream
Tssr124455	transcription start site region 124455	1042 bp upstream
Tssr124456	transcription start site region 124456	1353 bp upstream
Tssr127690	transcription start site region 127690	634 bp downstream
Vdac2	voltage-dependent anion channel 2	1072 bp upstream