rs251880480 SNP Detail

Summary

• ID
  rs251880480
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:80557275 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGCTTGGCA CTAGAGCCCA
  AGCAGGCTCA AATGAATGAG GAACGCTATT TTAAGCTCTA GCAGTGGCTT GGCCCAGTGT
  TGGGTGCTCC CACAAAGCAC TGGACCAAGC TCAGGAAGAG GCTCCTACTT TGCCCATCTG
  CTCTGCTTGG GTGTTGAGAG ATGTTTCCAA GGAGCCTGGT TAGAATACCA GTTGGACAGC
  K
  GGCTGTGGGG TAGGTGAAAG ACTAATCTTT TCCTCTGTGC CCTTGGGTAC TTGGGTAGTT
  TCCAGATAAA ATGTGGGCTA TTGCATTAAA TTCAAACTTC AAATAGGTCT TTTTGTATCT
  TTTTATTCCA AATAAGCTGC ACGGCGGCTG CATTGATGCT AAAAGTGACT TTTCATTTAC
  CTAAATTCAG ATTTAATGGG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss394704983	MGP_WTSI_15_80503504	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T	G	T	T	T	T	T	G	T	T	T	T	T	T	G	T	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs251880480					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T	G	T	T	T	T	T	G	T	T	T	T	T	T	G	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss394704983	MGP_WTSI_15_80503504	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:80557275 () rs orientation: forward

Symbol	Name	Function Class
Cpgi7376	CpG island 7376	638 bp distal
Fam83f	family with sequence similarity 83, member F	within coordinates
Rr506033	regulatory region 506033	1217 bp distal
Rr506034	regulatory region 506034	937 bp distal
Rr506035	regulatory region 506035	66 bp distal
Rr506036	regulatory region 506036	453 bp proximal
Rr506037	regulatory region 506037	714 bp proximal
Rr506038	regulatory region 506038	1509 bp proximal
Tssr132233	transcription start site region 132233	1441 bp downstream
Tssr132234	transcription start site region 132234	1428 bp downstream
Tssr132235	transcription start site region 132235	1397 bp downstream
Tssr132236	transcription start site region 132236	1378 bp downstream
Tssr132237	transcription start site region 132237	1213 bp downstream