rs251890481 SNP Detail

Summary

• ID
  rs251890481
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:48041484 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTCAGGGAA GCCATGAAGG
  ACCCTTTGGT TGTAGCCATT TTCCTTCAGG AGCATAAGCT CTGCTGAGTT GAGAGGGGCA
  GGGCAGGGGC AGGGCAGGGG CAGGGACAAC ACCATAAGTG CTGATCCTTG AAAAAGAATA
  TGTCTCCTGC CAGACTCATC AAGGTGGGGT GGGGACTTGA GTGGGGAGAG GGTCTTCAGT
  S
  TGGGTAGTCA CTGTCCTGTG TTTTAATCTC CATCCCCAGG TCCAAAGCAT CCAGGTCCCT
  AACCAGGAGT TCGGCCTGAG TGAGAATGAG CCTGGCACCA ATTTTGTCTA CGCCCAATTT
  GACGGGATCA TGGGCCTGGC CTACCCCGGC CTGTCTTCAG GGGGCGCCAC CACCGCCTTG
  CAGGGCATGT TGGGGGAGGG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss398352973	MGP_WTSI_17_47867508	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs251890481					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss398352973	MGP_WTSI_17_47867508	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:48041484 () rs orientation: forward

Symbol	Name	Function Class
Pgc	progastricsin (pepsinogen C)	within coordinates
Rr528106	regulatory region 528106	150 bp proximal
Tssr5147	transcription start site region 5147	1808 bp downstream
Tssr5148	transcription start site region 5148	1246 bp upstream
Tssr5149	transcription start site region 5149	924 bp upstream
Tssr145004	transcription start site region 145004	1817 bp downstream
Tssr145005	transcription start site region 145005	1796 bp downstream
Tssr145006	transcription start site region 145006	1767 bp downstream
Tssr145007	transcription start site region 145007	1735 bp downstream
Tssr145008	transcription start site region 145008	1714 bp downstream
Tssr145009	transcription start site region 145009	1686 bp downstream
Tssr145010	transcription start site region 145010	1304 bp downstream
Tssr145011	transcription start site region 145011	1285 bp downstream
Tssr145012	transcription start site region 145012	1268 bp downstream
Tssr145013	transcription start site region 145013	1216 bp downstream
Tssr145014	transcription start site region 145014	422 bp downstream
Tssr145015	transcription start site region 145015	407 bp downstream
Tssr145016	transcription start site region 145016	403 bp downstream
Tssr145017	transcription start site region 145017	39 bp upstream
Tssr145018	transcription start site region 145018	51 bp upstream
Tssr145019	transcription start site region 145019	82 bp upstream
Tssr145020	transcription start site region 145020	103 bp upstream
Tssr145021	transcription start site region 145021	129 bp upstream
Tssr145022	transcription start site region 145022	161 bp upstream
Tssr145023	transcription start site region 145023	188 bp upstream
Tssr145024	transcription start site region 145024	299 bp upstream
Tssr145025	transcription start site region 145025	643 bp upstream
Tssr145026	transcription start site region 145026	899 bp upstream
Tssr145027	transcription start site region 145027	1832 bp upstream
Tssr145028	transcription start site region 145028	1860 bp upstream
Tssr145029	transcription start site region 145029	1901 bp upstream
Tssr148459	transcription start site region 148459	1758 bp upstream
Tssr148460	transcription start site region 148460	1706 bp upstream
Tssr148461	transcription start site region 148461	1694 bp upstream
Tssr148462	transcription start site region 148462	1651 bp upstream
Tssr148463	transcription start site region 148463	1278 bp upstream
Tssr148464	transcription start site region 148464	1193 bp upstream
Tssr148465	transcription start site region 148465	432 bp upstream
Tssr148466	transcription start site region 148466	398 bp upstream
Tssr148467	transcription start site region 148467	70 bp downstream
Tssr148468	transcription start site region 148468	101 bp downstream
Tssr148469	transcription start site region 148469	191 bp downstream
Tssr148470	transcription start site region 148470	1868 bp downstream
Tssr148471	transcription start site region 148471	1887 bp downstream
Tssr148472	transcription start site region 148472	1903 bp downstream
Tssr148473	transcription start site region 148473	1920 bp downstream
Tssr148474	transcription start site region 148474	1939 bp downstream