rs251892638 SNP Detail

Summary

• ID
  rs251892638
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:6157031 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACAAGCTCGC CTGTCACTCC
  GCAGGAGGTG AGTGGTCCAG GCTAGGCTAG GCGCCCTGGA GTCTCCGGCG TCGAGCGGCG
  GGTGGGGGGC TCGAGACCGC ACCCCGCGCC CGCGCCCGAG CCCGCGCCCG AGCCCGCGCC
  CGAGCCCGCG CCCCAGCCCG CGCGAGCCCG GGGCAGCACC ACCCGCCGCG GGTCCGCTCG
  S
  GGAGGGCGGG CCGGGGAGGC GCCGGGTCAC GTGGCGCGGT CACGTGCCCA CCCCCCCACC
  CCCCACCCCG ACTGACAGTC CGGGTGGCGG CCGAGGGAGG CGGAGTCACA GCCGAGACCC
  GGTGGGGGGT AGTTGTGGCG GCGGCGGCGG CGGCCCTGGT GGCGGCGGCT GCGGCGCCGC
  CGAGGGCTGC CGGAGAAGGA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	JF1/MsJ	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SPRET/EiJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss397548398	MGP_WTSI_17_6106756	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	JF1/MsJ	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SPRET/EiJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs251892638					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss397548398	MGP_WTSI_17_6106756	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:6157031 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8568	CpG island 8568	within coordinates
Gm65964	predicted gene, 65964	386 bp upstream
Rr340081	regulatory region 340081	within coordinates
Rr405018	regulatory region 405018	within coordinates
Tssr4988	transcription start site region 4988	514 bp upstream
Tssr142458	transcription start site region 142458	274 bp downstream
Tssr142459	transcription start site region 142459	193 bp downstream
Tssr142460	transcription start site region 142460	156 bp downstream
Tssr142461	transcription start site region 142461	139 bp downstream
Tssr142462	transcription start site region 142462	52 bp upstream
Tssr142463	transcription start site region 142463	68 bp upstream
Tssr142464	transcription start site region 142464	94 bp upstream
Tssr142465	transcription start site region 142465	124 bp upstream
Tssr142466	transcription start site region 142466	152 bp upstream
Tssr142467	transcription start site region 142467	378 bp upstream
Tssr146313	transcription start site region 146313	449 bp upstream
Tssr146314	transcription start site region 146314	268 bp upstream
Tssr146315	transcription start site region 146315	217 bp upstream
Tulp4	TUB like protein 4	within coordinates