rs251895405 SNP Detail

Summary

• ID
  rs251895405
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:18300622 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ACTACTGAAT AAAGTTTTCA GAGCTTGAGC AGTAAGATTG
  ACTTGTGCTC ATTCTTATTG TTTCTTTCCT TCCCACTCTC TCACTCCCTT GCCCTGGGTC
  Y
  CCACTAACCA CTAATTATCC TTGCAGATAG GGATAGAATG GCCTGTCACC ACAGACTGAG
  CCATCTAGCT GGACCATCAA AGTTTGACTC CTATTTGGA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CZECHII/EiJ	FVB/NJ	I/LnJ	KK/HlJ	LG/J	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	QSi3/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	ST/bJ	SWR/J	WSB/EiJ
ss370731013	MGP_WTSI_7_19152046	EVA_MGPV3	EVA_MGPV3	f	SNP	C	T	T	T	T	T	C	T	T	T	T	T	T	T	T	C	C	C	T	T	T	T	T	T	C	T	C	T	C	T	C	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CZECHII/EiJ	FVB/NJ	I/LnJ	KK/HlJ	LG/J	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	QSi3/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	ST/bJ	SWR/J	WSB/EiJ
rs251895405					SNP	C	T	T	T	T	T	C	T	T	T	T	T	T	T	T	C	C	C	T	T	T	T	T	T	C	T	C	T	C	T	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss370731013	MGP_WTSI_7_19152046	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:18300622 () rs orientation: forward

Symbol	Name	Function Class
Psg27	pregnancy-specific beta-1-glycoprotein 27	within coordinates
Tssr2095	transcription start site region 2095	852 bp downstream
Tssr64739	transcription start site region 64739	1607 bp downstream
Tssr64740	transcription start site region 64740	1586 bp downstream
Tssr70834	transcription start site region 70834	494 bp downstream
Tssr70835	transcription start site region 70835	590 bp downstream
Tssr70836	transcription start site region 70836	621 bp downstream
Tssr70837	transcription start site region 70837	677 bp downstream
Tssr70838	transcription start site region 70838	821 bp downstream