rs251898607 SNP Detail

Summary

• ID
  rs251898607
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:101673858 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGAGTGTGT GTTTGAGACG
  ATGGCCAAGA CAGACCTCAT CCCATTCCAC AAACCTACTT AGTGGTCCCC TTTCCTTCTT
  ATCCAGGCTT CTCCTATAGA GAATCCTGTG AGAGGTGGAT TGGATTGGTG AAGAGGTGGA
  GAGCTTTGAA ATTCCAAAAG AAAGGTACCC ACAGTGGAAG AATGGGGAAT GAATCCCTTA
  R
  GAAAAGACCT CAAGAAAAAA TTCACTTTTG GTTTCTGGAG TATTTAGAGT ATTAACACAA
  AAGGAGGTGA GAGCGAAGAT GGGGATGCTA ATGCTTCCTG AATCTCAGAG ACTGTAAGTC
  ACCATGCCTC CTTCCACTGG CAGCCCTGCC AGCATCACCC TCAGGCTAAC TAACCTCACC
  AAAACACCAC AGCTAGAATC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss384487346	MGP_WTSI_11_101644346	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs251898607					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss384487346	MGP_WTSI_11_101644346	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:101673858 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3886	CpG island 3886	1034 bp proximal
Etv4	ets variant 4	within coordinates
Tssr110962	transcription start site region 110962	1253 bp downstream
Tssr110963	transcription start site region 110963	1290 bp downstream
Tssr110964	transcription start site region 110964	1395 bp downstream
Tssr110965	transcription start site region 110965	1428 bp downstream
Tssr110966	transcription start site region 110966	1484 bp downstream
Tssr110967	transcription start site region 110967	1576 bp downstream
Tssr110968	transcription start site region 110968	1634 bp downstream
Tssr110969	transcription start site region 110969	1781 bp downstream
Tssr110970	transcription start site region 110970	1809 bp downstream