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rs251908527 SNP Detail
Summary
  • ID
    rs251908527
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr11:94841729 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                CTTCAGGAGA GTACTGGATC
GACCCTAACC AAGGCTGCAA CCTGGACGCC ATCAAGGTCT ACTGCAACAT GGAGACAGGT
CAGACCTGTG TGTTCCCTAC TCAGCCGTCT GTGCCTCAGA AGAACTGGTA CATCAGCCCG
AACCCCAAGG AAAAGAAGCA CGTCTGGTTT GGAGAGAGCA TGACCGATGG ATTCCCGGTA
Y
GTGAGCTGAA CCCCAGAGCA ACTCTACAGG AGATGGGTTA GCCTCTTATC CAGAAAGCAC
AGGAAGTCCT GGAGTGGATT TAATCTGCTT AGTGGAAGGG CAGATACAGA TCTAGGATAC
AGGAGTTCTG GGTAGGAAAG CCAGGGACGA GAAGGTCCAC GTGATCGCTC ATTCTCTCCT
CTCTCTGGCC CGTGCAGTTC                                            

Y = C/T

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss384336263 MGP_WTSI_11_94812217 EVA_MGPV3 EVA_MGPV3 f SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs251908527 SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation
Type		 Alleles
ss384336263 MGP_WTSI_11_94812217 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP C/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr11:94841729 () rs orientation: forward
Symbol Name Transcript Protein Function
Class		 Allele Residue Codon
Position		 AA
Position
Col1a1 collagen, type I, alpha 1 within coordinates
Rr454892 regulatory region 454892 1153 bp proximal
Tssr3647 transcription start site region 3647 1078 bp upstream
Tssr104261 transcription start site region 104261 1469 bp downstream
Tssr104262 transcription start site region 104262 729 bp downstream
Tssr104263 transcription start site region 104263 596 bp downstream
Tssr104264 transcription start site region 104264 574 bp downstream
Tssr104265 transcription start site region 104265 548 bp downstream
Tssr104266 transcription start site region 104266 536 bp downstream
Tssr104267 transcription start site region 104267 469 bp downstream
Tssr104268 transcription start site region 104268 441 bp downstream
Tssr104269 transcription start site region 104269 428 bp downstream
Tssr104270 transcription start site region 104270 407 bp downstream
Tssr104271 transcription start site region 104271 353 bp downstream
Tssr104272 transcription start site region 104272 159 bp downstream
Tssr104273 transcription start site region 104273 65 bp downstream
Tssr104274 transcription start site region 104274 47 bp downstream
Tssr104275 transcription start site region 104275 38 bp downstream
Tssr104276 transcription start site region 104276 27 bp downstream
Tssr104277 transcription start site region 104277 202 bp upstream
Tssr104278 transcription start site region 104278 254 bp upstream
Tssr104279 transcription start site region 104279 271 bp upstream
Tssr104280 transcription start site region 104280 326 bp upstream
Tssr104281 transcription start site region 104281 340 bp upstream
Tssr104282 transcription start site region 104282 386 bp upstream
Tssr104283 transcription start site region 104283 558 bp upstream
Tssr104284 transcription start site region 104284 583 bp upstream
Tssr104285 transcription start site region 104285 652 bp upstream
Tssr104286 transcription start site region 104286 674 bp upstream
Tssr104287 transcription start site region 104287 701 bp upstream
Tssr104288 transcription start site region 104288 723 bp upstream
Tssr104289 transcription start site region 104289 764 bp upstream
Tssr104290 transcription start site region 104290 810 bp upstream
Tssr104291 transcription start site region 104291 819 bp upstream
Tssr104292 transcription start site region 104292 857 bp upstream
Tssr104293 transcription start site region 104293 1005 bp upstream
Tssr104294 transcription start site region 104294 1042 bp upstream
Tssr104295 transcription start site region 104295 1100 bp upstream
Tssr104296 transcription start site region 104296 1119 bp upstream
Tssr104297 transcription start site region 104297 1152 bp upstream
Tssr104298 transcription start site region 104298 1190 bp upstream
Tssr104299 transcription start site region 104299 1218 bp upstream
Tssr104300 transcription start site region 104300 1238 bp upstream
Tssr104301 transcription start site region 104301 1362 bp upstream
Tssr104302 transcription start site region 104302 1374 bp upstream
Tssr104303 transcription start site region 104303 1388 bp upstream
Tssr104304 transcription start site region 104304 1427 bp upstream
Tssr104305 transcription start site region 104305 1452 bp upstream
Tssr104306 transcription start site region 104306 1467 bp upstream
Tssr104307 transcription start site region 104307 1483 bp upstream
Tssr104308 transcription start site region 104308 1553 bp upstream
Tssr104309 transcription start site region 104309 1573 bp upstream
Tssr104310 transcription start site region 104310 1618 bp upstream
Tssr104311 transcription start site region 104311 1714 bp upstream
Tssr104312 transcription start site region 104312 1784 bp upstream
Tssr104313 transcription start site region 104313 1800 bp upstream
Tssr110222 transcription start site region 110222 5 bp upstream
Tssr110223 transcription start site region 110223 308 bp downstream
Tssr110224 transcription start site region 110224 393 bp downstream
Tssr110225 transcription start site region 110225 606 bp downstream
Tssr110226 transcription start site region 110226 639 bp downstream
Tssr110227 transcription start site region 110227 678 bp downstream
Tssr110228 transcription start site region 110228 690 bp downstream
Tssr110229 transcription start site region 110229 750 bp downstream
Tssr110230 transcription start site region 110230 781 bp downstream
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/17/2024
MGI 6.24 		The Jackson Laboratory