rs251927613 SNP Detail

Summary

• ID
  rs251927613
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:101675256 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTCTGAGTC GGAAGGCGGC
  AGGGAGCCCG GGTCCATGAG CTTTCCCTGC GGGACCATCA GCGCTTCGCC CAAGCTCCCA
  TTTCCGGGAG ATTTCTGCTG GAAGGAGGGG GGAAGAATGC CCCCGAATCA CCCTGAGGAG
  TCTAGCTTGG GGTTGGGGGT GGGGTCCCGG GGTGGCTCAG GGGCCAGGCG GTCCTGGACC
  Y
  ACTGAGACCC CCCGGGAGGG GGCTGCGGGG CGAGTAGGGG CGGGGTGCGG GGCGGGGGCG
  GGCGTGGAGG CCGGCGCGGC GCTCACGCTG CAGAAGGTGT AGGGCACTCG CTGGTCCAAG
  TATCCGCCTT TCATCCTCCG CTCCATCCGG CCGCTCCCTC CGGCCACAGG GCCGGGCCCC
  CGCGCGGAGG CAGAGACCTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss384487363	MGP_WTSI_11_101645744	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs251927613					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss384487363	MGP_WTSI_11_101645744	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:101675256 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3886	CpG island 3886	within coordinates
Etv4	ets variant 4	within coordinates
Gm71843	predicted gene, 71843	1319 bp downstream
Rr386582	regulatory region 386582	1490 bp upstream
Rr402993	regulatory region 402993	843 bp upstream
Rr457076	regulatory region 457076	606 bp distal
Rr457077	regulatory region 457077	527 bp proximal
Rr457078	regulatory region 457078	870 bp proximal
Tssr110962	transcription start site region 110962	112 bp upstream
Tssr110963	transcription start site region 110963	80 bp upstream
Tssr110964	transcription start site region 110964	within coordinates
Tssr110965	transcription start site region 110965	30 bp downstream
Tssr110966	transcription start site region 110966	86 bp downstream
Tssr110967	transcription start site region 110967	178 bp downstream
Tssr110968	transcription start site region 110968	236 bp downstream
Tssr110969	transcription start site region 110969	383 bp downstream
Tssr110970	transcription start site region 110970	411 bp downstream
Tssr110971	transcription start site region 110971	736 bp downstream
Tssr110972	transcription start site region 110972	772 bp downstream
Tssr110973	transcription start site region 110973	795 bp downstream
Tssr110974	transcription start site region 110974	822 bp downstream