rs251930052 SNP Detail

Summary

• ID
  rs251930052
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:72534723 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTCAGACAC CACTTCAGGT
  GTCCCCGACC TGGACTCTGT CACACCTACC TTCAGTGCCA TGTGTCCTTT CGGTTGCCAC
  TGCCACCTGC GGGTTGTTCA GTGCTCTGAC TTGGGTGAGT CACTAAGCAC TTAGGCTAAG
  AGTGTACAGA GAAGCACAGG CCCTGCCTGG GAGCCCTTAC TAAAAAGAAT ACATTTGCTA
  Y
  CCTGTGAGAT GGGTTTAAAA CTGTAGGAGT GGGGAGGTTG AGTCACCACA GGCTGAGGTG
  TATGAGGGTG CTCAGAGTCC CTGCATTTCT CCCAGTGTCT GTGTGTGTCC ATATGCATGT
  ATGTACCCAC CCCCTTTACA CCAGCTGTGA CAACAGACTG GATGAGCCAG GCTTATGCTG
  GTGATGATGC TGGCCCCCAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss403771544	MGP_WTSI_X_70736456	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs251930052					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss403771544	MGP_WTSI_X_70736456	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:72534723 () rs orientation: forward

Symbol	Name	Function Class
Bgn	biglycan	within coordinates
Rr4564	regulatory region 4564	within coordinates
Rr7746	regulatory region 7746	within coordinates
Tssr161208	transcription start site region 161208	330 bp downstream
Tssr161209	transcription start site region 161209	307 bp downstream
Tssr161210	transcription start site region 161210	288 bp downstream
Tssr161211	transcription start site region 161211	242 bp downstream
Tssr161212	transcription start site region 161212	176 bp downstream
Tssr161213	transcription start site region 161213	122 bp downstream
Tssr161214	transcription start site region 161214	197 bp upstream
Tssr161215	transcription start site region 161215	848 bp upstream
Tssr161216	transcription start site region 161216	894 bp upstream
Tssr161217	transcription start site region 161217	926 bp upstream
Tssr161218	transcription start site region 161218	946 bp upstream
Tssr161219	transcription start site region 161219	1004 bp upstream
Tssr161220	transcription start site region 161220	1609 bp upstream
Tssr161221	transcription start site region 161221	1623 bp upstream
Tssr161222	transcription start site region 161222	1687 bp upstream
Tssr161223	transcription start site region 161223	1853 bp upstream
Tssr161224	transcription start site region 161224	1893 bp upstream
Tssr163544	transcription start site region 163544	285 bp downstream
Tssr163545	transcription start site region 163545	933 bp downstream
Tssr163546	transcription start site region 163546	964 bp downstream