rs251937901 SNP Detail

Summary

• ID
  rs251937901
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:135764503 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCATGGCCC TTTCAAGAGA
  GGATAACACC TACCTCCACA TTCAGAGTGG GTGTTTCCAG GACAGACTCT AACATGAGTG
  CTGTGGAGTG GAGAGTGCTT GCATTCTTGA CGGGAAGTGA GTTGGAGGTC CCGATCTGCC
  CCTGAAGATG CTTTGTGGTT TCAAAGTCTT GACTAGATTG CTTTCCCTCC CAAGATCTTA
  Y
  ATTATTTTAT TTATGAGTAG AGTAGCCTAG AGCATTGCTG GGCCATTAAA TACAACAGAA
  CCCTAACCAG TTGGATTTCT CAGATTTAGG TTAAGGACTA CCCAATCCTT TCTTCTAGAG
  GCCCAGAGAG CAGGGTAAGA CCATAGCTAT ATTAGCTATA GGGGTCTAGC TCTCATGTCC
  AGGAACAAAG ATGCTATCCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	FVB/NJ	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SM/J	SPRET/EiJ	SWR/J	WSB/EiJ
ss351551704	MGP_WTSI_1_137733342	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C
SNP Consensus Information
SNP					Consensus Type	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	FVB/NJ	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SM/J	SPRET/EiJ	SWR/J	WSB/EiJ
rs251937901					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss351551704	MGP_WTSI_1_137733342	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:135764503 () rs orientation: forward

Symbol	Name	Function Class
Rr419292	regulatory region 419292	1902 bp distal
Rr419294	regulatory region 419294	342 bp distal
Rr419295	regulatory region 419295	33 bp distal
Rr419296	regulatory region 419296	127 bp proximal
Rr419297	regulatory region 419297	984 bp proximal
Tnnt2	troponin T2, cardiac	Intron
Tssr9005	transcription start site region 9005	369 bp downstream
Tssr9006	transcription start site region 9006	1645 bp upstream