rs251940650 SNP Detail

Summary

• ID
  rs251940650
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:62492786 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCTATTTGC ATAAGAAGTG
  CATGCAAGCA CTTATGTGTG TGTTGCTGGG TAGAACCCAG CATATCATAT ATACTAGCTC
  AACAGATTTT GCACTGAGGT GTTTTGAGAC AGGATTTCAT TCCGTAGGCC AGGCTGGTCT
  TGAACTCACA AGAACCCTAC TCTAGTCTTC AGGTTCACAT ATCCCAGGCT GACCTCATAG
  Y
  TGAAGATGAC CTTGAACTTC TGATTCTGCT GCCTCCACAT ACCCAGAGCT TGGGAGTTTG
  TCACAATGTC CAGTTTATGA GGTGCTGGGG ATGGAGCTCA GAACTTCATG TTTGCTAGGG
  AAACACTGCA TCCCCAACCC TTGAGAAAAT CAAACATACT CATATACTGA AGGCATAGCA
  TTAGCAGTTT TCTATTACCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss383610511	MGP_WTSI_11_62415462	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs251940650					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss383610511	MGP_WTSI_11_62415462	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:62492786 () rs orientation: forward

Symbol	Name	Function Class
2410006H16Rik	RIKEN cDNA 2410006H16 gene	917 bp upstream
Cpgi3027	CpG island 3027	522 bp proximal
Rr241190	regulatory region 241190	1786 bp distal
Rr246930	regulatory region 246930	14 bp proximal
Rr402627	regulatory region 402627	628 bp upstream
Snord49a	small nucleolar RNA, C/D box 49A	1500 bp upstream
Snord49b	small nucleolar RNA, C/D box 49B	1126 bp upstream
Trpv2	transient receptor potential cation channel, subfamily V, member 2	1655 bp downstream
Tssr102048	transcription start site region 102048	907 bp upstream
Tssr102049	transcription start site region 102049	997 bp upstream
Tssr102050	transcription start site region 102050	1101 bp upstream
Tssr102051	transcription start site region 102051	1155 bp upstream
Tssr102052	transcription start site region 102052	1221 bp upstream
Tssr102053	transcription start site region 102053	1487 bp upstream