rs251946240 SNP Detail

Summary

• ID
  rs251946240
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:70701533 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACAGCGCAGA TCAAAGAGGG
  GCCTGGAGCT CTGAGAAGAG AAGGAGACTC ATCCGTGTTG AGTTTCCACA AGTACTGTCT
  TGAGTTTTGC AATAAAAGTG GGATAGCAGA GTTGAGTGAG CCGTAGGCTG AGTTCTCTCT
  TTTGTCTCCT AAGTTTTTAT GACTACAAAA ATCAGTAGTA TGTCCTGAAA TAATCATTAA
  R
  CTGTTTGAAA GTATGACTGC TTGCCATGTA GATACCATGG CTTGCTGAAT AATCAGAAGA
  GGTGTGACTC TTATTCTAAA ATTTGTCACA AAATGTCAAA ATGAGAGACT CTGTAGGAAC
  GAGTCCTTGA CAGACAGCTC AAGGGGTTTT TTTCCTTTGT CTCATTTCTA CATGAAAGTA
  AATTTGAAAT GATCTTTTTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321815782	CHEV_6_70674543	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs251946240					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:70701533 () rs orientation: forward

Symbol	Name	Function Class
Gm68839	predicted gene, 68839	1897 bp downstream
Igk	immunoglobulin kappa chain complex	within coordinates
Igkc	immunoglobulin kappa constant	1886 bp upstream
Igkj1	immunoglobulin kappa joining 1	1950 bp downstream
Igkj2	immunoglobulin kappa joining 2	1595 bp downstream
Igkj3	immunoglobulin kappa joining 3	1289 bp downstream
Igkj4	immunoglobulin kappa joining 4	964 bp downstream
Igkj5	immunoglobulin kappa joining 5	626 bp downstream
Rr158	regulatory region 158	1402 bp proximal
Rr150202	regulatory region 150202	within coordinates
Rr399684	regulatory region 399684	586 bp upstream
Rr399685	regulatory region 399685	998 bp upstream
Rr399686	regulatory region 399686	1962 bp upstream
Tssr56951	transcription start site region 56951	1978 bp downstream
Tssr56952	transcription start site region 56952	1698 bp downstream
Tssr56953	transcription start site region 56953	1002 bp downstream
Tssr56954	transcription start site region 56954	870 bp downstream
Tssr56955	transcription start site region 56955	649 bp downstream
Tssr56956	transcription start site region 56956	1259 bp upstream
Tssr56957	transcription start site region 56957	1881 bp upstream
Tssr56958	transcription start site region 56958	1928 bp upstream
Tssr56959	transcription start site region 56959	1946 bp upstream
Tssr56960	transcription start site region 56960	1969 bp upstream
Tssr56961	transcription start site region 56961	1983 bp upstream
Tssr56962	transcription start site region 56962	1991 bp upstream
Tssr61321	transcription start site region 61321	1933 bp downstream