rs251947575 SNP Detail

Summary

• ID
  rs251947575
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:99758133 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGCAGCCCC CAGGGGGCCG
  AAGGGTAGGA AGGGCAGCGG GGATGAGAGG GCGCTCGGCC TGGAGTCTGT GGGCACCAGA
  GATTGGGGCC CAAGTACCAG AGTCTTGGGA TTAAGTGGCT AGGTAATTTT CTGGCAAGGG
  CAGGAGATTC CTCCTTCGCT CCCTCTTCAC CTTCGCCTTC TCTCCTTCCC GTCTCTCCCC
  Y
  GGCTTCTCTG GCCGTGGCTC CCCCCCTCCC GTGGTTTCCG GGCGCTGCTT TGCCTAGCAC
  TGCACCTGGC CGAGAATGCG GGGAGGCTGG TGAACTGCAG CCAAAAGCGG CGAAGTTCAA
  AGGCGAGGTG GGCCGGGACC GCACGCACTC TGACATAAGC GCGGGGCGGC GACTCCCCAA
  CCTGGGCTCC AATCAGCAGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323137448	CHEV_9_99776499	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs251947575					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:99758133 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22205	CpG island 22205	within coordinates
Gm16004	predicted gene 16004	within coordinates
Gm67910	predicted gene, 67910	within coordinates
Rr685462	regulatory region 685462	1938 bp distal
Rr685463	regulatory region 685463	352 bp distal
Rr685464	regulatory region 685464	within coordinates
Rr685465	regulatory region 685465	80 bp proximal
Rr685466	regulatory region 685466	1703 bp proximal
Sox14	SRY (sex determining region Y)-box 14	within coordinates
Tssr91083	transcription start site region 91083	67 bp downstream
Tssr91084	transcription start site region 91084	118 bp downstream