rs251949008 SNP Detail

Summary

• ID
  rs251949008
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:6158388 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTAGACTGGG TCTTTTAACC
  CTGGCTGGCC TGGGACTCAG TGTGTAGACC AGACTGGCCT AGTAGAGATC GCCTGCCTTT
  ACCCCCAGAG CTGAGATGAA GGGTTTGTGC CACCACACCA GGCCCACCTC TTTATATTAC
  GGCGGCAGAG CTTCGTAAGG ATTTTCCTTA CCGTTCTGCA GCAGGTTTTA GGAGGGGCAA
  Y
  TGTTCCTAAG GTTTAGAGGA ATGTAAAAAC CATTCTGAGA TTGTCTTATT TTGAGCCTGT
  GGGATTTTGT TTTTGTTTTT GTTTCTGGGG TCATCGCTCC TTGGTGGGAG TTTTTCAGGA
  AGCCCAAGGG GATCGTACCA TATTCCTGGA GAATTCCAAT TTGGGATTAA TGTGAAATGA
  CTGGGCCCTT GCACATAGCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss397548415	MGP_WTSI_17_6108113	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs251949008					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss397548415	MGP_WTSI_17_6108113	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:6158388 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8568	CpG island 8568	558 bp distal
Gm65964	predicted gene, 65964	1743 bp upstream
Rr340081	regulatory region 340081	within coordinates
Rr405018	regulatory region 405018	1096 bp downstream
Tssr4988	transcription start site region 4988	822 bp downstream
Tssr142458	transcription start site region 142458	1631 bp downstream
Tssr142459	transcription start site region 142459	1550 bp downstream
Tssr142460	transcription start site region 142460	1513 bp downstream
Tssr142461	transcription start site region 142461	1496 bp downstream
Tssr142462	transcription start site region 142462	1294 bp downstream
Tssr142463	transcription start site region 142463	1275 bp downstream
Tssr142464	transcription start site region 142464	1238 bp downstream
Tssr142465	transcription start site region 142465	1206 bp downstream
Tssr142466	transcription start site region 142466	1191 bp downstream
Tssr142467	transcription start site region 142467	951 bp downstream
Tssr146313	transcription start site region 146313	1806 bp upstream
Tssr146314	transcription start site region 146314	1625 bp upstream
Tssr146315	transcription start site region 146315	1574 bp upstream
Tulp4	TUB like protein 4	within coordinates