rs251955998 SNP Detail

Summary

• ID
  rs251955998
• Variation Type
  SNP
• Alleles
  C/G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:22533301 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGAAAGCAA GAACAAATTT
  ACTTTCCACT ATCTTTGTAA TTGGCATATT AGGAAATACA TAATGCAACC GCTCTATAAC
  AAGTTTTTTT TTCCTTCGTG TTTTTATTGT TTTTTTTTTT TTTTTTACAT TTCAAATATT
  ATCCCCTTTC CAAGTTTCTC CTCCACAAAC CCACTATCCC CCTGCCTCTA TGAGTGTGCT
  B
  CCCCACCTAC CCACCCACTT CTACCTCAGC GCCCTAGCAT TCCCCTACCC TGGGTCATTG
  AGCCTGCACA GGACCAAGGG GCTCCCCTCC AGTGATGACC AATAAGGCCA TTTCCTGCTA
  AGTGTGCAGC TGGAGCCATG GGTCCCTGCA TGTCTACTCT TTGGTTGGTG GTTTAGTCCC
  AGGGAGCTTA GGTTGGGGCG                                            
  
  B = C/G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SM/J	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss397823285	MGP_WTSI_17_22451287	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	T	T	C	C	T	T	T	T	T	T	T	T	T	T	T	T	C	C	C	T	T	T	T	C	C	T	C	T	C	C	T	T	T	T	T	T	C	G	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SM/J	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs251955998					SNP	C	C	C	T	T	C	C	T	T	T	T	T	T	T	T	T	T	T	T	C	C	C	T	T	T	T	C	C	T	C	T	C	C	T	T	T	T	T	T	C	G	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss397823285	MGP_WTSI_17_22451287	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:22533301 () rs orientation: forward

Symbol	Name	Function Class
Gm7072	predicted gene 7072	within coordinates
Gm53992	predicted gene, 53992	602 bp upstream
Rr392409	regulatory region 392409	1507 bp downstream
Rr523017	regulatory region 523017	within coordinates
Rr523018	regulatory region 523018	507 bp proximal
Tssr146602	transcription start site region 146602	474 bp downstream
Tssr146603	transcription start site region 146603	494 bp downstream