rs251959727 SNP Detail

Summary

• ID
  rs251959727
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:7630853 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTTGCTAGA CAAGAGCTGT
  ACCACGGAGC TATCCTCATC TAGTAAGGAT GTATATTCAC CCTCGTGCGT GTTTTGCCGG
  GACACTAGGG TCCTTTCTCC CTAACAGGGA GGACTGAGCA CAACTATCGT GGATTGCTTA
  TAACAGCCTT GATCATCGCA GTAATGGGCA CAGTTGAAAG GAGGGATGGA TATTGCTTTG
  Y
  TGCTCTAGTG CAAGTCCTAG CTCCTATGGG TTTTTTGGTT GGTTTGTTTG TTTGTTTGTT
  TGTTTTTATG ACTTGAGATG CAGGCTCCGT ATGTAGGCTA GATTGACCGC AGCCCTCTTC
  CTTCATGTGA GGTAGGGCTT GTTTTGTGTG CAGGTGGATG CTGTTACTGA AAACGGGTGT
  GTGTTTTGAT CTCTCTACAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss403006284	MGP_WTSI_X_7341740	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs251959727					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss403006284	MGP_WTSI_X_7341740	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:7630853 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22579	CpG island 22579	1541 bp distal
Rr394688	regulatory region 394688	within coordinates
Rr689655	regulatory region 689655	1909 bp distal
Rr689656	regulatory region 689656	517 bp distal
Rr689657	regulatory region 689657	206 bp distal
Tfe3	transcription factor E3	within coordinates
Tssr160424	transcription start site region 160424	1925 bp downstream
Tssr160425	transcription start site region 160425	1885 bp downstream
Tssr160426	transcription start site region 160426	1805 bp downstream
Tssr160427	transcription start site region 160427	1777 bp downstream
Tssr160428	transcription start site region 160428	1716 bp downstream
Tssr160429	transcription start site region 160429	1700 bp downstream
Tssr160430	transcription start site region 160430	649 bp downstream
Tssr160431	transcription start site region 160431	351 bp downstream
Tssr160432	transcription start site region 160432	327 bp downstream
Tssr160433	transcription start site region 160433	293 bp downstream
Tssr160434	transcription start site region 160434	263 bp downstream
Tssr160435	transcription start site region 160435	199 bp downstream
Tssr162815	transcription start site region 162815	826 bp upstream
Tssr162816	transcription start site region 162816	1183 bp downstream