rs251972180 SNP Detail

Summary

• ID
  rs251972180
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:46991959 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGACGCGCA CGTGCAGTGA
  GAATTGCCGG CCCGACAGCT TCAGGGACTT GTAGTCCACG AATTACCCCA GGGCCGAAAG
  ATGGGGAGCG GGTGGGCGGG GCCGGTTTGT GCGCATGCGC AGAACACCAG TTCACGTCGC
  ACGCCTGAGG GTCACTGGGT AATGTAGTTC TTTGTGGTCC GGGCAGGGGA TGGCGGAGGC
  R
  GGGCAAGAGG CGGACTTGTC CTCGCTTGCG TCAGTCTCGG GCACGGGGCG GGGCTGGAGG
  ACTAAGAGCC CCAGCATGTC CTGCCCCGCC GGAAGTGAAG GTGCGGGTCC GGCTGTGGGC
  TCTGAGAGGG TGAGGCGCGA GGAAATACCA ACGCCGAGAA TCAGTGGGGC GGGTAGGGGA
  CTCTGTAGCT GGGGCCATTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss398326255	MGP_WTSI_17_46817982	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs251972180					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss398326255	MGP_WTSI_17_46817982	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:46991959 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9239	CpG island 9239	within coordinates
Klhdc3	kelch domain containing 3	119 bp upstream
Mea1	male enhanced antigen 1	within coordinates
Ppp2r5d	protein phosphatase 2, regulatory subunit B', delta	1958 bp downstream
Rr405317	regulatory region 405317	within coordinates
Rr527794	regulatory region 527794	1684 bp distal
Rr527795	regulatory region 527795	within coordinates
Rr527796	regulatory region 527796	1846 bp proximal
Tssr5136	transcription start site region 5136	252 bp upstream
Tssr5137	transcription start site region 5137	89 bp upstream
Tssr144872	transcription start site region 144872	555 bp downstream
Tssr144873	transcription start site region 144873	22 bp downstream
Tssr144874	transcription start site region 144874	5 bp upstream
Tssr144875	transcription start site region 144875	943 bp upstream
Tssr144876	transcription start site region 144876	1002 bp upstream
Tssr148367	transcription start site region 148367	299 bp upstream
Tssr148368	transcription start site region 148368	277 bp upstream
Tssr148369	transcription start site region 148369	258 bp upstream
Tssr148370	transcription start site region 148370	199 bp upstream
Tssr148371	transcription start site region 148371	174 bp upstream
Tssr148372	transcription start site region 148372	100 bp upstream
Tssr148373	transcription start site region 148373	868 bp downstream
Tssr148374	transcription start site region 148374	880 bp downstream