rs251980590 SNP Detail

Summary

• ID
  rs251980590
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:91734782 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAAGTAAACT GTCAAGCCTT
  CCCTGTCAAC CAAAGGCCAG AGCTGATGAG GGCCCTTGCT CCATATTCAT GGAACACAGA
  GCAATACCCA CGTGTGCCAG TCCTTACCGC CCTGCTCACC CCGGCCCCGT GCCACCCTTC
  CTTCCTTCCT TTCTCCTCCA AAGCCTTTGG GAACTAGGAA TTGATACACC CTCCCCTCAA
  R
  TTGTACCACA GGAAACTGAG GGCCAAAGAC ATCACTAGTG TGAAGAGCCT TAGCTAGGGT
  GTATGGGCAG GCCTTTGACC TCCATGTAGC CCAAGGCTAT GCAGGAAGTA GCCTGAGAGG
  GTTTCTTTTC CCTCTCTGCC TCTGGCCTCC AGTCCTCACC TCAGCTCCAT ACCCTACCAT
  GGAAAGCCAC GCAGACCATG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss369190318	MGP_WTSI_6_91707795	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs251980590					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss369190318	MGP_WTSI_6_91707795	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:91734782 () rs orientation: forward

Symbol	Name	Function Class
Rr137561	regulatory region 137561	1182 bp distal
Rr141761	regulatory region 141761	219 bp proximal
Rr379752	regulatory region 379752	within coordinates
Slc6a6	solute carrier family 6 (neurotransmitter transporter, taurine), member 6	within coordinates
Tssr1939	transcription start site region 1939	679 bp downstream
Tssr57748	transcription start site region 57748	1784 bp downstream
Tssr57749	transcription start site region 57749	1644 bp downstream
Tssr57750	transcription start site region 57750	1281 bp downstream
Tssr57751	transcription start site region 57751	1177 bp downstream
Tssr57752	transcription start site region 57752	807 bp downstream
Tssr57753	transcription start site region 57753	18 bp upstream
Tssr57754	transcription start site region 57754	117 bp upstream
Tssr57755	transcription start site region 57755	208 bp upstream
Tssr57756	transcription start site region 57756	241 bp upstream
Tssr57757	transcription start site region 57757	278 bp upstream
Tssr57758	transcription start site region 57758	309 bp upstream
Tssr57759	transcription start site region 57759	534 bp upstream
Tssr57760	transcription start site region 57760	590 bp upstream
Tssr57761	transcription start site region 57761	607 bp upstream
Tssr57762	transcription start site region 57762	635 bp upstream
Tssr57763	transcription start site region 57763	662 bp upstream
Tssr57764	transcription start site region 57764	687 bp upstream
Tssr57765	transcription start site region 57765	727 bp upstream
Tssr57766	transcription start site region 57766	749 bp upstream
Tssr57767	transcription start site region 57767	816 bp upstream
Tssr57768	transcription start site region 57768	839 bp upstream
Tssr57769	transcription start site region 57769	1031 bp upstream
Tssr57770	transcription start site region 57770	1138 bp upstream
Tssr62095	transcription start site region 62095	525 bp downstream
Tssr62096	transcription start site region 62096	800 bp downstream
Tssr62097	transcription start site region 62097	1015 bp downstream