rs251980999 SNP Detail

Summary

• ID
  rs251980999
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:90622641 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTGAAGCAC AAGCCCAAGG
  CTACAGCGGA GCAACTGAAG ACTGTCATGG ATGACTTTGC ACAGTTCCTG GATACATGTT
  GCAAGGCTGC TGACAAGGAC ACCTGCTTCT CGACTGAGGT CAGAAACGTT TTTGCATTTT
  GACGATGTTC AGTTTCCATT TTCTGTGCAC GTGGTCAGGT GTAGCTCTCT GGAACTCACA
  Y
  ACTGAATAAC TCCACCAATC TAGATGTTGT TCTCTACGTA ACTGTAATAG AAACTGACTT
  ACGTAGCTTT TAATTTTTAT TTTCTGCCAC ACTGCTGCCT ATTAAATACC TATTATCACT
  ATTTGGTTTC AAATTTGTGA CACAGAAGAG CATAGTTAGA AATACTTGCA AAGCCTAGAA
  TCATGAACTC ATTTAAACCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss365836720	MGP_WTSI_5_90903808	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs251980999					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss365836720	MGP_WTSI_5_90903808	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:90622641 () rs orientation: forward

Symbol	Name	Function Class
Alb	albumin	within coordinates
Rr123615	regulatory region 123615	within coordinates
Rr123616	regulatory region 123616	398 bp proximal
Tssr47120	transcription start site region 47120	100 bp downstream
Tssr47121	transcription start site region 47121	482 bp upstream
Tssr47122	transcription start site region 47122	1684 bp upstream
Tssr51773	transcription start site region 51773	137 bp upstream
Tssr51774	transcription start site region 51774	77 bp upstream
Tssr51775	transcription start site region 51775	517 bp downstream
Tssr51776	transcription start site region 51776	1704 bp downstream
Tssr51777	transcription start site region 51777	1732 bp downstream
Tssr51778	transcription start site region 51778	1745 bp downstream
Tssr51779	transcription start site region 51779	1804 bp downstream