rs251986874 SNP Detail

Summary

• ID
  rs251986874
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:130555040 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    AGAGGGCTG TTTGCCCCCA AGGCAGGGGA
  TAGAGGGCAG GCATGGATGT CACAGTCACA GTCTGTCCTG CTCCCATGGG AACCTCCTCA
  TGGTTCATGA GTATCCCCTT AGAAAATGGG GCACCATTTC TGGTAGGTTG GGTCCTGAAG
  Y
  CTGGCCACCT AGAGATGCTC TGGCCCCTCT CTCCTGCCTC CCTCCCCACA CTTCACTCTT
  TTCACTGAAG GTTCTCTAAT GTCTCCTCTG CGCCTGGCCT GTGCTTGGAC CTGGGAGCCA
  GGAggggctg gggagatggg tcagcggata                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321318889	CHEV_4_130383644	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs251986874					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:130555040 () rs orientation: forward

Symbol	Name	Function Class
Gm26716	predicted gene, 26716	1416 bp upstream
Gm42316	predicted gene, 42316	1945 bp downstream
Gm69250	predicted gene, 69250	1224 bp upstream
Rr600596	regulatory region 600596	916 bp proximal
Rr600597	regulatory region 600597	1235 bp proximal
Sdc3	syndecan 3	1411 bp downstream
Tssr39293	transcription start site region 39293	1851 bp downstream
Tssr39294	transcription start site region 39294	1691 bp downstream
Tssr39295	transcription start site region 39295	1526 bp downstream
Tssr39296	transcription start site region 39296	1498 bp downstream