rs251986949 SNP Detail

Summary

• ID
  rs251986949
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:167892198 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCAAAAAAA AAAAAAAAAA
  CACCCCATTT AAAGACTGAC AGGGACACAC GGAGGCCCAG AGAGGGAAAA GGATTTGCCC
  AAGGCTACAC AGCAGTGTTC TCTTGGCTCC AACACAAACT CCCTCTCGTG GCCCTAGGGG
  TCTAGGTGAG TGTGAGGAAG AGGCCCCTCC TCTCTCCACC TGCACGTGCC AGCCTGCTGG
  K
  GACCGCGACG ACACTCACCG TGGAGCCGGT CTGGACCTCC GGGACCGAGC TCCGCTGCTG
  CCCGGCGCCG GCTGGTTGTC ACTGACCGCG GGCGGACGGA GCTCCCTGCA GCCCTCTGAC
  CACCGCGGAT GCTGGTTCTG GGAATGCACT CGGTGGCCCC TGTATCCGGC TGTTCCCGGC
  TCTGGCCGCT GCGATAGAGC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss356517417	MGP_WTSI_2_167875778	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	G	G	T	T	T	T	G	G	G	T	G	T	T	T	T	G	T	T	T	G	T	T	T	T	T	T	T	G	G	T	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs251986949					SNP	G	G	G	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	G	G	T	T	T	T	G	G	G	T	G	T	T	T	T	G	T	T	T	G	T	T	T	T	T	T	T	G	G	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss356517417	MGP_WTSI_2_167875778	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:167892198 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12760	CpG island 12760	within coordinates
Gm57439	predicted gene, 57439	within coordinates
Rr406967	regulatory region 406967	within coordinates
Tssr27820	transcription start site region 27820	197 bp upstream
Tssr27821	transcription start site region 27821	74 bp downstream
Tssr27822	transcription start site region 27822	111 bp downstream
Tssr27823	transcription start site region 27823	130 bp downstream
Tssr27824	transcription start site region 27824	1668 bp downstream