rs251988816 SNP Detail

Summary

• ID
  rs251988816
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:87405847 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCCTATCTC TCGCCAGTGT
  CAGAATGTAG AAATGTTTAC AAAATGCTCA TTAAAAGAAA AAGGGGTTGC AAGATAAAAA
  TGAAATCTGG TGTACAAGTT TACACTGGGA AGATAAGAGA GGCTAGGCCC TATAGGGGAT
  TTTGCTATCC AATTACTGCA ACCTGACTTT TGGTGGGGAG GGGGGAAGGG GGGAAGGGGG
  R
  AAGGGGGAGG AGGCGGAGGA GGGGGGAGGG GAAGACAGAG GAAGAGTTTC CATACTTGTG
  TCGTGTCCAG TGACACAAGA CATTTACACT CCGCAAGATA AAACTGCCAG TTACAGCCCA
  GGGGAGTTAA GCCTTCCTAG GTTGGCCTGG GAGCTGAGCA GAGAGTCATG GGGTCTCTGG
  TTCTGCCGCT GAGCGCCGTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SJL/J	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss369107418	MGP_WTSI_6_87378859	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SJL/J	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs251988816					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss369107418	MGP_WTSI_6_87378859	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:87405847 () rs orientation: forward

Symbol	Name	Function Class
Bmp10	bone morphogenetic protein 10	129 bp upstream
Gm66434	predicted gene, 66434	within coordinates
Tssr57543	transcription start site region 57543	121 bp upstream
Tssr57544	transcription start site region 57544	211 bp upstream