rs251994666 SNP Detail

Summary

• ID
  rs251994666
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:85613530 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    AGATCATTT GAGTGCCGAA CATTCTGCAG
  GAACATGCTC AGGGTGTTCC TTGGTCACAC CACCTCCAGT CCTCAGTCTA TCACTTTCAT
  CATATCTGAT AAATCCAAAC CTCTTCAATG AACACAGGAA GAGAGTTGGA AGGGATACAG
  Y
  CTATTAGGGT ATGGTGGAGA CGTTAACTAC AGTGTCTTTG TTTCCCTTGA GGGAACCAAA
  AAGGACTTAG CTGGGTTCCT TGATGGAGGC AGGGACTACT TGGTAGATGA TGTAAGCAGA
  AAGAATAGGA AAGGCATACC TCTCCGTTGT                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss319826438	CHEV_1_87582384	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs251994666					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:85613530 () rs orientation: forward

Symbol	Name	Function Class
Rr34934	regulatory region 34934	472 bp proximal
Rr366934	regulatory region 366934	1663 bp upstream
Sp100	nuclear antigen Sp100	within coordinates
Tssr7685	transcription start site region 7685	705 bp downstream