rs252000576 SNP Detail

Summary

• ID
  rs252000576
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:108216971 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GATGGGTGGC CTTGGGCTCT
  AGGCTCCCAC GGGCGGGACA CCGCTTACTT TCTCCTCTGG TACTACAGCT GGAATGCAGG
  CCTATCCTCG GTTATACAAG GAGGGCAACT TCCTGGTGAC TCATCGGGAA ACCTCTGTTT
  TGCAGTTAAA AAGCACATTC TTTCCGAAAT CCTAGCACAT AAATAAATGC CTTTGTCTTC
  Y
  CTAGGAGAAT GGCAAGAATG AAGAGATTCT GAATTCCCTC AAGTACGTCC GACCTGGTGG
  CGGGTTCGAG CCCAATTTTA CATTGTTTGA GAAGTGCGAA GTGAATGGTG AGAAGGCTCA
  CCCGCTCTTT ACCTTCCTGC GGAATGCCTT GCCAACACCC AGTGACGACC CCACTGCGCT
  CATGACCGAC CCCAAGTACA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss378864963	MGP_WTSI_9_108242103	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs252000576					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss378864963	MGP_WTSI_9_108242103	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:108216971 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22334	CpG island 22334	within coordinates
Gm37401	predicted gene, 37401	1499 bp upstream
Gm57050	predicted gene, 57050	within coordinates
Gpx1	glutathione peroxidase 1	within coordinates
Rhoa	ras homolog family member A	1829 bp downstream
Rr383883	regulatory region 383883	within coordinates
Rr686784	regulatory region 686784	1510 bp distal
Rr686785	regulatory region 686785	486 bp distal
Rr686786	regulatory region 686786	352 bp proximal
Rr686787	regulatory region 686787	1853 bp proximal
Tssr3010	transcription start site region 3010	22 bp downstream
Tssr87090	transcription start site region 87090	702 bp downstream
Tssr87091	transcription start site region 87091	674 bp downstream
Tssr87092	transcription start site region 87092	540 bp downstream
Tssr87093	transcription start site region 87093	525 bp downstream
Tssr87094	transcription start site region 87094	488 bp downstream
Tssr87095	transcription start site region 87095	473 bp downstream
Tssr87096	transcription start site region 87096	462 bp downstream
Tssr87097	transcription start site region 87097	4 bp upstream
Tssr87098	transcription start site region 87098	156 bp upstream
Tssr87099	transcription start site region 87099	526 bp upstream
Tssr91519	transcription start site region 91519	104 bp downstream
Tssr91520	transcription start site region 91520	149 bp downstream
Tssr91521	transcription start site region 91521	296 bp downstream
Tssr91522	transcription start site region 91522	354 bp downstream
Tssr91523	transcription start site region 91523	547 bp downstream