rs252002317 SNP Detail

Summary

• ID
  rs252002317
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:84072426 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TCAGACCAT GACTAAGTAT TATCAAAGAT
  CTGTCATTGT GAAAGCTAGC CTTGGAGAAC TCTAAAGTGC TGTGAATGAG TTCAGGTGTA
  GAGCACTTTT CAGCTAATAA GTAGGAAATT TTTACCTGTC ACACAGACTG GTTTAACTGG
  Y
  CTAAAGCCAG TGttttgttt ttatttgaag ggacttcata tgtgtagcct tgaacttgga
  attctcttgt ctcagtgtct caagtataag gattgtttgt aggcctgtgc tgacataccG
  CCTCCCTTCC CTCCtgagat atggttgttc                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323769377	CHEV_11_83995102	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs252002317					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:84072426 () rs orientation: forward

Symbol	Name	Function Class
Acaca	acetyl-Coenzyme A carboxylase alpha	within coordinates
Cpgi3430	CpG island 3430	1092 bp distal
Rr453130	regulatory region 453130	876 bp distal
Rr453132	regulatory region 453132	1603 bp distal
Tssr103798	transcription start site region 103798	1943 bp downstream
Tssr103799	transcription start site region 103799	1913 bp downstream
Tssr103800	transcription start site region 103800	1751 bp downstream
Tssr103801	transcription start site region 103801	1737 bp downstream
Tssr103802	transcription start site region 103802	1723 bp downstream
Tssr103803	transcription start site region 103803	1240 bp downstream